- Region 'REG00001500'
Cis-regulatory Region
Name
Cirobu.REG.KhC2.5771334-5773564|Msx
Short name
n/a
Region ID
REG00001500
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(complex_region)
Author
Monia Teresa Russo (2019-03-18)
Annotator
Marion Gueroult-Bellone (2019-03-18)
Curator
Marion Gueroult-Bellone (2019-03-18)
5,771,3345,773,564
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,771,334 / 5,773,564] on scaffold KhC2
Sequence given by the author. At the larval stage, this CRM is active in the region of the primordial pharynx, in the sensory vesicle and in the neck connecting the sensory vesicle, in the visceral ganglion and in the caudal muscles. At earlier stages, it is active along the neural tube in the tailbud, along the neural folds in the neurula, in the precursors of sensory organs and in the ventral epidermis in both stages, and also in the mesoderm that will give rise to the muscles.
Show sequence
Length: 2,231
ctacgcattgatgtcgcaatctccccaagtttcccaccacctatatgaaagctacgaagg
cggaaagatttcggcataataacctattgttgacgtcataatcgaccgataaataagcgg
cgaagatcgcgtcctctacaataggaggtggaacactcataaaaaatcacagcggtaaag
ccgctaccacacgctgctaacatttattaaggagacatgctacactcgacgtcataatgc
gcgtgacgactatattgtgacgtcacagagagataaataggatatttattgcgcggtaga
atagaacgacgagcaataaaatgaaatgaattttggaaatggtaaattaatttattttat
aagtcgtctaaactttatccatttccgtataaaacacgacttttaccaactgttaatttt
tattaacttaccacataaagtagtttattgggccgctctgaacgaatggaaatcaccgta
ctctattaagttgatcgaccttttacatttcaatatgttaaaaatcgtacattaaaaaaa
gatatagtaggatggggggatgggatacgttttcattctattttcttgtccaatttggta
gtaaaaaaggaactttcaaagatttataaaaccgcatccttacgactttcatagacggat
ggtaattgtttaaaacacgaacagtatattaagataatattttctaatggcgtcccgtct
tcccccgccctactatattaaaaagaggcaatatgaaccaatacttaagattttagttgg
tgcacatcaattactgtttttataagtccatgcagaccgatgtccatttaccagtgatta
aacagggcaataaaattacgaagaatcgccttgcgtcgctgcaaacatatttattaggca
ttagcaagtgtgacgtaataatgcctcttgttcgacgtgacggcgagcgcttgcttttga
aacaccgcgacgtcgacgaagacggtgtcgtaacttaacaatagtctggggcctatgatg
tcataatgcccatttggtgcactcgcgtgctgtcgcccaaaatcgcaattaactcgatga
cactggcagcatatgacgtcataaaatggttgccagggtcccggaccgagacagtaattc
acttttatgacccgaatatctaatgggacccatgatgtacacttagaagcacgcagcaac
tgattattaatgttgagtgtgttacggatgactgttaatttcacaaacaaacaaaaaaac
agagttcgttggcctttagatcactattagaaacaacagtaattggtgggaacttgtttc
ggagcgagccaaataaaaaagctaaaacaaacataacagtaaagcttaattaaaataata
agcgttgttaataaatattagcatatagaccaaacaccaaattgtgtgcaatcagttttt
gcatctttaaaactattaattttttatgttcgccgtgcgaatttttatttgaatgattct
attaataaagcctgaaatcctagcaatcattttgagcttccacatttgatattaaaattc
tcgtatttgttgttatttattaatgattttgagtgacttttttagactcagtttttgttt
tgtttttcaattattcaagttcggatgtgtggagatacgggattaatacaatgaatgttc
aattaaaaacacaaaagttttaatttgaattaatgtcggcgctgcagacgagccgagagc
ttgtcggatttaaaatgtaatcctccaattttgtctggcactgacggtgtagatgcaatc
tgaaaatggcgactgagcaggatcgggtcgcggctggagctccggcgggctcgggacgct
cataattccgccggtaatccccgtaacgtcgatgaaagcgaacgcgccgacaaaagtgac
gaagattaagtgtaacaacatggtttaaacaaacagactggagcagcggagacgagagag
agagggaacgtaatcgccgcggccgaagcgtgaccaagtcgttgtattgttataatagaa
aatcgttttattatgatttaatgaacgcgcgctggcgactgaaggatgctgtataattgg
gggtaatggggaaatatcgggagaaaaaatatggcgatctgcgggagaggatagtcgctt
acataatctctggagtttagttgaagcagttcatattgagagaagcatccctcagacgag
tagttcgtaaa
