- Region 'REG00001496'
Cis-regulatory Region
Name
Cirobu.REG.KhC6.1500090-1502346|Neurogenin
Short name
n/a
Region ID
REG00001496
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Alberto Stolfi (2019-03-11)
Annotator
Marion Gueroult-Bellone (2019-03-11)
Curator
Marion Gueroult-Bellone (2019-03-11)
CONS00001534: p.Cirobu.REG.KhC6.1500090-1502346::bpFOG>H2B::mCherry
CONS00001529: p.Cirobu.REG.KhC6.1500090-1502346>H2B::mCherry
CONS00001533: p.Cirobu.REG.KhC6.1500090-1502346>Galnt7::CFP
CONS00001532: p.Cirobu.REG.KhC6.1500090-1502346>nls::LacZ
CONS00001531: p.Cirobu.REG.KhC6.1500090-1502346>H2B::VenusYFP
CONS00001530: p.Cirobu.REG.KhC6.1500090-1502346>H2B::Venus
CONS00001528: p.Cirobu.REG.KhC6.1500090-1502346>unc-76::venusYFP
CONS00001527: p.Cirobu.REG.KhC6.1500090-1502346>unc-76::mCherry
CONS00001526: p.Cirobu.REG.KhC6.1500090-1502346>unc-76::eGFP
CONS00001525: p.Cirobu.REG.KhC6.1500090-1502346>unc-76::venus
1,500,0901,502,346
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,500,090 / 1,502,346] on scaffold KhC6
The Neurog b-line CRM was cloned using the following primers: Neurog −3,010 forward (5′-GTCTGTTTCCGCATACATGC-3′) and Neurog −773 reverse (5′-CTTATACGCCGAACCTCATG-3′). This enhancer is active in the bipolar tail neuron precursors.
Show sequence
Length: 2,257
gtctgtttccgcatacatgcaatatgcacgcgttcattataatatcaagttttaccaatt
tccgtaaatttttaatggaacagtgtaattaacccgactatattaccgttttccgatcgc
attgttacgtcacaataaaaccgcggtgtgttctgcgaagttaggaagtatctcattacg
tcataatcgtcggatagttttgattgttttatcataatgcggactaagtagtccattact
acaccgacgtaatcgccactttgtgacgtcacaataccgcaccagatcaatgacgtcatc
aaaggggaaactcggaagtaataagtgacgaaatcaaaggcggaattatgacgttttcgc
ttttgattgttacgtacgtgggaaagagcaaacgaatcgggaaacgttttgctatcgtag
attgtgacgaaataatgaaatagattgtgacgtcatgatgatttttatctccgaataaac
ggaatcgagttatcagcacacgcgtcacgaacattgtttaccaactgaatacaattgtta
agttatttaaataaattttaatcaccttaaaccgagctgaattacacgccgatcaaacat
atattatttgttttactttgtcgttacatttgtacttgctaaagcaaattcgctttaaaa
aacggcccttctgaaagctttgactggtaaatgacatcaaagctgcggcgtttaaaagct
gtttactgttcgttgtttaatcggtacagtgtttggtgtttattctatactccagtctgg
tttattttatttattttacaccgttttggttaattttgttgcgtaatttaaaatctggta
cactgtttgtcccgtatttccctacccgcattacgagacctgattttacgctgtgtgacg
tcacgccatatggcacaaaatgcaactttaaacgaataagcagcgtccacaaaatacata
tcgggtgtattgcgtcgcgctaattgctcagatttccggaagtataatatttcaaccaat
ctctgcttattaaaacgttagattgactaattagaaaccacgaataatgttaattgctcc
aacccagtggttcattaattatgggttgtctaaaataaatgttggccaacacatttcaga
aaattaagaattccaaagtgttaatcacccacaaagtaacatacgtagtagctcgtaagc
gggcacgaggtgtatgaaacagaacacccgtgttataacaactgccatcatagatatcta
aacatatgtttagatatctatgctgccattactccgcaatgcgcggataaataaattaca
ttcattcgtatttgcaaaaatggtgtttttatgtctgtacggtccgggcataaagacgac
agattgccacgcatgcagtcgggatcaattatttataaataatatgaattattcacgagg
aatggcgctttcctgagccccgtgatttaggaaaatttgagaaaaatcacaaaaataaat
tacgaagtcgaaaatggagaaattttgggtaatttttatcatgaaatatgacatgcgtcc
aaattcgtgtatagtaggttggggtaaagtggtccatgtttttattctatttgtcgtctc
atttagtagtaaacaaagaatattcacaaaattataactgtatccttgcgactctaaaca
agcgttgttggttgttacaaaacgacctggaattatgggatattttgtgctgtacccatc
ttaccccacgatgctataaattctgattaaaaagcgacaagtttgtcaatagtaatttgg
agcttataattgacgaaacaaagtaatggttcggtttataaatgaaaataattgaaatat
atactggaacattctttatcgattaggagaatgacttttgaaaaatataaataatttctt
tataaaatcgggttggaaaatagaaataaaataagacagtaatgtgccggtatacatttt
ttctatattgattaaaattgaaacgtaaaataaaattgtcaaaacgcaaagtggaataca
gcgtaagacaataaatgtaattggacagttacggcttagtttaattgccataattttgtt
tactaccaaatggaacggtaaagtagaataaagtcctggaccatcttacccaacctatac
tgtatttaaagacgacgtaaattggcatgtagtcgcatttaaattctgagcaatattttg
tgtctctcggcagcgcgcatgaggttcggcgtataag
