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CIS-REGULATION

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  1. Region 'REG00001495'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.L152:99299-100379|Islet

Short name

Islet -7216/-6240 (Stolfi 2010)

Region ID

REG00001495

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Alberto Stolfi (2019-02-28)

Annotator

Marion Gueroult-Bellone (2019-02-28)

Curator

Marion Gueroult-Bellone (2019-02-28)

View position in WashU

Description

This genomic region is not able to drive reporter gene expression.

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2012.L152:99298-102536|Islet by deletion

Regulated gene(s)

KH2012:KH.L152.2 (ISL1; ISL2; LHX9)

Construct(s) made to test this region

CONS00001656: p.Cirobu.REG.KH2012.L152:99299-100379>unc76::GFP

Show in situ data
Overview of functional TF binding sites in this region

99,299100,379

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [99,299 / 100,379] on scaffold KhL152

Genomic region located upstream of Islet (KH.L152.2) TSS (-7216/-6240 bp). The sequence was given by the author.

Show sequence

Length: 1,081

aagtataccacgcgagttagttcggccaggaagcgcgctgtttattatcaagttattatg
acgtcatataaaatacgtcacatttgtagcacctggttatctgccttcccacggttaaaa
cagatgcgacctcggttatcagtggtttgacatggagatcgtaaatcaagcgacgaatat
ctgtgacacgtcacgtgacgagattgctgacataccaggacacttaacggtatctggtta
ggggaagtacctgtagcgtcatacacataacctgcataatgctttatagcttcgaatacg
atagcgaagatcaaattaattaaaacaacgaagagaaggattcgaagcaaaacgacagtc
gttaaaacacactacgggtaaaaattacttggggaaaagcgtggctgttacatccaaatc
aaaatgtaagccgtcaatggtttgtgaacaaacggtaactcttgtcacctctaagctaaa
ctcattttttgcagagtttaaaaataccgagtagcaactgccgtctggaacgaataaatg
aatctaacgacgcagacgttatgacaggtgtgttcatacaccatgtttcccttttacggg
aaagcgtataaaatatatatttacattcttgcctaaagtataaacgaacttttattgaat
ggtcaaaatgggtcatcttaaattccattataacttttccatttcaaacatttttccgca
gcatcgtcataaaacagggattccaatagaaacatcataaaacaccaaaccatgttgttt
atggatcaccgtgtttgttgtattaacaagagttataactacaacatgacgtgactagat
tgacacaacaactatggttggcagtcaaaacacacgaccccaccccataagatggagcca
cgccaccaaatcaacacagcagaagctccaggtggtttggtaggttctgttatcacaaca
ctacaggccatgagatctatgatctataccgtctgttatatttagtggatttgtgatttt
aaccgaacaccttcactagtttaaaccaaccgacaactcaccgcgaacaatcagcgaata
t

Reference(s)

Stolfi et al. (2010). Early chordate origins of the vertebrate second heart field. Science 329(5991):565-8

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