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CIS-REGULATION

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  1. Region 'REG00001494'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.L152:101110-101528|Islet

Short name

Islet -5396/-4982 (Stolfi 2010)

Region ID

REG00001494

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Alberto Stolfi (2019-02-26)

Annotator

Marion Gueroult-Bellone (2019-02-26)

Curator

Marion Gueroult-Bellone (2019-02-26)

View position in WashU

Description

This 420pb cis-regulatory region drives reporter gene expression in atrial siphon muscle precursors only.

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2012.L152:99298-102536|Islet by deletion

Regulated gene(s)

KH2012:KH.L152.2 (ISL1; ISL2; LHX9)

Construct(s) made to test this region

CONS00001655: p.Cirobu.REG.KH2012.L152:101110-101528>unc76::GFP

Show in situ data
Overview of functional TF binding sites in this region

101,110101,528

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [101,110 / 101,528] on scaffold KhL152

Cis-regulatory region located upstream of Islet (KH.L152.2) TSS (-5396/-4982bp).

Show sequence

Length: 419

tatgttcatttagttggtaggttatgtgtgtaagtgacatcataacaacttgtatgaggc
aaacaaggggttatgacgtaataatagaattattgatgtttcacagggtgaggtgtgacg
taataatagttctgacagttaaagtgattttgaataaaaacaaaaaacagaatgtttaag
tcgcgaaaatcgcgtgggcagcgttaaccagagcatcgcatgtgacaagcgaacgaaatc
ccagcagatctacgacgttggtccgctgagagttcgagcgaattcgggatgtaacgtcga
tgaaagacgaaaagcggtccttgcctcgacaagaaaggacgaaccgcgcgatagtagatt
ttatggcgtatggtgttctataacacagctgtgggttgaagtggtttcgaatatttaag

Reference(s)

Stolfi et al. (2010). Early chordate origins of the vertebrate second heart field. Science 329(5991):565-8

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