- Region 'REG00001487'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C14:4311719-4314636|Mrf
Short name
n/a
Region ID
REG00001487
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(complex_region)
Author
Alberto Stolfi (2019-02-25)
Annotator
Marion Gueroult-Bellone (2019-02-25)
Curator
Marion Gueroult-Bellone (2019-02-25)
CONS00001515: p.Cirobu.REG.KH2012.C14:4311719-4314636>unc76::eGFP
4,311,7194,314,615
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,311,719 / 4,314,615] on scaffold KhC14
The full-length Mrf cis-regulatory module was cloned using the primers (5′-GCAAGCTCCTTTGGGGTTTGG-3′) and (5′-CGTATAAATATGTCAAACTACCGGC-3′). This sequence is able to drive reporter activity in paraxial mesoderm.
Show sequence
Length: 2,897
cgtataaatatgtcaaactaccggctagatttctgaaatacaaaatatatgaggtcaata
cataatcttaatatcttgcaacttatggttgtaattttgcaacggttctccttgcactgt
aattgcaagtaacacataatattaaacctataactgcacattcgtttaggttaagatttt
gtataaaaaacaagtcttgcgaaaaataatttagaaccggcgaaaagtatataccctgaa
gacttgatataatttaagcgtgataagtttaatccattcacttttataatgtttcacgat
ttaatattagaaacttgtttcgtcggggattcgtaactgtattctttctgattctatata
tagtaaagtctggtatataatatacttcgtgcaacgataaggcttgcagtttaattgcaa
ctaacatattattacgaacttccaaactcaacattaagcatgattcctgtgtaaaataac
ttgatcaccgaatggctaatgtaatactcgtaggctacttttgcaagaccttatgtctgc
aatttgctgcagtttaaaactttagttcgccgctaactatataccatgtagatctacttg
tattaaaacacgctatgtgaccatgcctggttataacagacattggctactatatatcat
tgactggctatcgcttgataactttaccatgcgtggctggctagcgatgttatagaatgc
atggcttgatgcaggcgctatttaagacactcgtttatgacgtcacagtaggtgacaatg
cttcttcttcttctgcattccagaactccggagcgccggtctcgcgggagactctaagtc
acgtgccgggcagactttgaagttataattttcactcgtactggttcgctcgagatgcgt
aagcctttattttatgactgaatcgttgnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
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nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnntcttttatcgtccta
tttggttgtaaacacagaatatttacggtttccatcttaccccacagtataattctagga
agcagcaaaggatttggattttaaacttcttaaacgtcgtcggatacttgaacaaaatta
aaaattggtaaaaaaaaattaaaatttttgtaaacgtttgtattttacttaattaaattt
ttattttcttactttttatttcctaaataaatcataatacacaacctcgtttatcgagac
gtcggctctcagtctcgtaaagagagttcggcaaccacagacatcagtagggcgatgaac
acatgttgttaccagctgggatttctatctaataagttgctcgcttcaggggcgcgaatc
aacgaaatttagcaccacgtactctaagctatagctttaacggtcaaactgggattcgct
aattgaaatcgcaaagaagttaaatctgtttcgaaaagaaattacttagatactgtagta
gtaggttgaagtaaaatggttcatgctttaatttcttttctcgtcccgtttggtagcaaa
aaaggagtatttacatatagtaggataggggaagatgggacaccttttcattctattttc
tcgtacattttggtagtaaacaaagaacattcaaagaaatataaaaccgtatcctcgcaa
ctcccatagaccattgttaattgtttaaaacacgaccagnnnnnnnnnnnnnnnnnnnnn
nnnnnnnnnnnnnnnnnnnnnnnnnnnnntataaaaccgtatcctcgcaactcccataga
ccattgttaattgtttaaaacacgaccaggatatttatatattttgtgctaaagttgttc
catcttcccccaccctactataattatgtaaccgtaacttcgcaaatataaaataacgtg
gttaattggtaaaagcgattgggaataagggattttatttcctaacgatttccatcttac
cccgtagcaccacattttaattacaatgtgctggcaccatcttactggtgcattttcctc
ttacatgcgccaaattattatgaatggctcatatgagcgtcggcatgcctgcactgccac
ccttgggatagaaacacgatcacaccgggcgacacgtggcagtccacctgttacggctgc
tgccatttaaacgacatttaaaaacttaaatgatatttcgcttgccgatcgagtggccaa
accccaaaggagcttgc
