- Region 'REG00001407'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C11:4405311-4406043|FoxA
Short name
n/a
Region ID
REG00001407
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Alicia Madgwick (2018-05-28)
Annotator
Marion Gueroult-Bellone (2018-05-28)
Curator
Marion Gueroult-Bellone (2018-05-28)
This 733bp sequence, located upstream of FoxA (KH.C11.313), drives reporter gene expression in endoderm, TLCs, notochord, brain, nerve cord and epidermis territories at the early gastrula stage.
Modification of FoxAa -1455/173
- FoxAa -5600/173 REG00000120 [ regulatory_region (extended_promoter) ]
- FoxAa -2685/173 REG00000121 [ regulatory_region (extended_promoter) ]
- FoxAa -1855/173 REG00000122 [ regulatory_region (extended_promoter) ]
- FoxAa -1855/173 Fox1 mutated REG00000123 [ regulatory_region (extended_promoter) ]
- FoxAa -1855/173 delta -1,37/-0,9 REG00000124 [ regulatory_region (extended_promoter) ]
- FoxAa -1758/173 REG00000125 [ regulatory_region (extended_promoter) ]
- FoxAa -1735/173 REG00000126 [ regulatory_region (extended_promoter) ]
- bpFoxAa REG00000857 [ regulatory_region (RNApol_II_core_promoter) ]
- Cirobu.REG.KH2012.C11:4406300-4406535|FoxA REG00001406 [ inactive_region ]
- FoxAa -1855/173 REG00000122 [ regulatory_region (extended_promoter) ]
- FoxAa -2685/173 REG00000121 [ regulatory_region (extended_promoter) ]
4,405,3114,406,043
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,405,311 / 4,406,043] on scaffold KhC11
This sequence was retrieved using ANISEED Blast tool. Primer used for cloning : Forward : tctaagctaactgcatccagca Reverse : aaatgtatgcaaagccaacaa
Show sequence
Length: 733
tctaagctaactgcatccagcaattgttctatttcgcaaaagtaactcaattacctgtta
aatacttgcgatttaaattcgactctttagtgaaaacctatactaattcaagtaagatgt
agatctaaattaaatacgaaaccactacactgttcactattgaacaaactgaattgtgct
tccaataaattccagctctcttataagacggaatgccgactttggagtagcgcccacttt
ccttctttcctcattatcatagacgtgctcgccctctaacccctttttcgcgccacggct
ctggtcaagcgtcggcggccactcgctttagaaacaccttccgccaccagcagcccacgt
taaaagcggtgccgcccatatgtacaactgatatcattatcatttctcagtgaacaaaca
aaacttaactttctaatgatgcgcattcagccacttctaatttacgttcaatgtcaacat
ctggccactttccccacttcccaaaacatatagtaacacaatacatttgcacagttaagt
tatccaaatagatacactatagcaatgtttgttatagtgactgttgttatagtatatatt
agcccagcaaacatattcaaatatcgataagtttgtccgacgaaccgaaaactcttggcc
aaatacaaaacgtttgctttttaggcgatccatatcaaatcaacaaatcaagttgttggc
tttgcatacattt
