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- Region 'REG00001326'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C10:2815687-2816162|Ubp4,Ubp8,Ubp11
Short name
n/a
Region ID
REG00001326
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
no_output
Author
Diana S. José-Edwards (2018-05-08)
Annotator
Marion Gueroult-Bellone (2018-05-08)
Curator
Marion Gueroult-Bellone (2018-05-08)
This 476bp sequence, located in the downstream region of KH.C10.320, drives no reporter gene expression in notochord. Compared to the larger active cis-regulatory sequence, it lacks one enhancer region containing 2 E-box and 1 Brachyury binding site.
Modification of Cirobu.REG.KH2012.C10:2815582-2817555|Ubp4,Ubp8,Ubp11 by deletion
- Cirobu.REG.KH2012.C10:2815582-2817555|Ubp4,Ubp8,Ubp11 REG00001325 [ regulatory_region (complex_region) ]
- Cirobu.REG.KH2012.C10:2815687-2816162|Ubp4,Ubp8,Ubp11 REG00001326 [ no_output ]
- Cirobu.REG.KH2012.C10:2816169-2817555|Ubp4,Ubp8,Ubp11 REG00001327 [ regulatory_region (complex_region) ]
- Cirobu.REG.KH2012.C10:2816957-2817555|Ubp4,Ubp8,Ubp11 REG00001328 [ no_output ]
- Cirobu.REG.KH2012.C10:2816165-2816946|Ubp4,Ubp8,Ubp11 REG00001329 [ regulatory_region (complex_region) ]
2,815,6872,816,162
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,815,687 / 2,816,162] on scaffold KhC10
This sequence was retrieved using ANISEED Blast tool, thanks to the information provided in FigS1.b and TableS5 of Jose-Edwards et al. 2015.
Show sequence
Length: 476
tactgtgtaggaacttctgtgatattgtgttgtgaagactttttgcaaattaacctcgac
ctcttgctttttttctccaatctctgatcatctggttacagtattaaactttattcaaat
tatcaagtgttttgtaaaagttgtgtggaatagtatgttgtaggaagaggtaaatgaatg
aatgaatgtaactttatcctcgcgtggccggaaaacgacagtcgtcataacatgggttta
acacctcgtgccagcttacgagttaccatgtatgttactttgtgggtgattattttttgg
gcgtattttttggcagttgtttgaggtatgtaaaatggacgaaaaccgtgcgacaatcaa
aaatatttgtatgttcgtgaatgccaaaacacatttctagcaagaatataaagttcggta
ctattgtttttatttattcttagtgggtttttatttattcttgtgggtgaggtcct
