- Region 'REG00001215'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C6:403974-404485|Onecut_HNF6
Short name
Onecut/HNF6 (-1377/-866)
Region ID
REG00001215
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Maria Rosa Pezzotti (2017-08-06)
Annotator
Marion Gueroult-Bellone (2017-08-06)
Curator
Delphine Dauga (2017-09-06)
This sequence derives from the 1.38kb cis-regulatory sequence of Onecut/HNF6 (REG00001214) active in the sensory vesicle, the visceral ganglion, the tail and ectopic mesenchyme in Ciona intestinalis tailbuds and larvae. All these activity domains except ectopic mesenchyme are lost by this deletion.
Modification of Cirobu.REG.KH2012.C6:403105-404485|Onecut_HNF6 by deletion
- Cirobu.REG.KH2012.C6:403105-405698|Onecut_HNF6 REG00001211 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.C6:404848-405698|Onecut_HNF6 REG00001212 [ inactive_region ]
- Cirobu.REG.KH2012.C6:404401-404922|Onecut_HNF6 REG00001213 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403105-404485|Onecut_HNF6 REG00001214 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.C6:403974-404485|Onecut_HNF6 REG00001215 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.C6:403548-403985|Onecut_HNF6 REG00001216 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.C6:403105-403572|Onecut_HNF6 REG00001217 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.C6:403733-404043|Onecut_HNF6 REG00001218 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403782-404043|Onecut_HNF6 REG00001223 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2012.C6:403839-404043|Onecut_HNF6 REG00001224 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403782-403940|Onecut_HNF6 REG00001228 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403782-404043(µ_Ngn)|Onecut_HNF6 REG00001229 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403782-404043(µ_OCa)|Onecut_HNF6 REG00001230 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403782-404043(µ_OCb)|Onecut_HNF6 REG00001231 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403782-404043(µ_Ngn-OCa)|Onecut_HNF6 REG00001232 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403782-404043(µ_Ngn-OCb)|Onecut_HNF6 REG00001233 [ inactive_region ]
- Cirobu.REG.KH2012.C6:403782-404043(µ_OCa-OCb)|Onecut_HNF6 REG00001234 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403782-404043(µ_Ngn-OCa-OCb)|Onecut_HNF6 REG00001235 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403733-403838|Onecut_HNF6 REG00001225 [ regulatory_region (enhancer) ]
- Cirobu.REG.KH2012.C6:403782-404043|Onecut_HNF6 REG00001223 [ regulatory_region (extended_promoter) ]
403,974404,485
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [403,974 / 404,485] on scaffold KhC6
This fragment extending from the position 1377 to 866 upstream of the translation start site was PCR-amplified from the 2.6kb Onecut/HNF6 enhancer (REG00001211).
Show sequence
Length: 512
atatacgagtggttcgcgtcggcgcgcggtttgagcaaaaacaataggaccgctgtcgaa
aacaaggcgatttcgcggtgctttaatataacgacattatgccctttttagagttgtatt
ttaaagctactacagcgagtttttgtcgcattgtggtaaacgtaacctatgtatgaaaac
atttatcgcaaaatataataaagcaaaagtaactttactattacacaaattaatgataca
gacttaccaatcgtaggactttagattcattttcatctttttaaaattctgtaaaaaagg
gaaaaaataaaacactttgatttttttaaatgatacaataaaagtacatggcgaaagcgg
tcccatttccgtgggtaaaggtcctattaatcgtttcaacatgtgcccgaataaatgaac
atatggcgtggcatacggacacgacgctcggcacagacccggctaatatacaatagacaa
gactatttcctttattgccctgctacatctcg
