- Region 'REG00001206'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C1:7132067-1808750|SOG/Chemokine-like
Short name
SOG 3kb upstream
Region ID
REG00001206
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Philip Barron Abitua (2017-05-12)
Annotator
Marion Gueroult-Bellone (2017-05-12)
Curator
Delphine Dauga (2017-08-29)
CONS00001189: p.Cirobu.REG.KH2012.C1:7132067-7135210>mCherry
7,132,0677,135,210
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [7,132,067 / 7,135,210] on scaffold KhC1
3kb region located upstream SOG-Chemokine-like (JGI ID : ci0100133186). It was amplified from genomic DNA using the following primers : 59-GGCAGATTTGACCTCAACTTG-39 and 59-GGCGTTTCCGAAAAGCCCTTT-39
Show sequence
Length: 3,144
ggcagatttgacctcaacttgaattatacttctttcttagtttatatatggcaaagcagt
atagcacaattgtagaacagaacacaaggctatgtgtttatgttctgtaaaaactctact
catactttaagaaggtatggactctgtgctttcatataaatatatacacaaacagtttta
cagaccgtacatgagtcatatacttatgcatccccgatttccattcgtcagttcttgtcg
ttttgcgtcttgtgcgtcatcacaaacgtgacgtgcgcaattgtacatgtcagacatatg
aataaggaatcagaagacttttgatttttcatgactgcaacacgcgtacgtaggtatgca
gacaagcaatgacaacacacgtgttagtgtctgcttttgagttgtggtcttgcctaaaaa
tgtaaatgatatacattgtacttgatgaaccactgaatgcgtatttagcaatcctgtaaa
cgacttaatattactcatgaaactagtgatctcacgaactatagttgtctagaatatatt
tgttacagaaaactctgtgtcagctttcttgttaaatgaacttaataacacttgctgtat
atacgctcacatattctaaattggtaaacaatgtttaactgttgtcattcaatacatcat
cactctaaagcaccaatatatttatggtagtgtgggggaagatggaacaccttttgctta
gttttctctttccatttggtagtgaacaaagaacagttaatgagctataaaaccgtatcc
taacgacttccacagaccgttgttaattgtttaaaacacaatcaggctatttggataatt
atgtgttaaaggtgtcccatcttcccccaccctactatatacctgtaactttcaatcgtt
acacttatagtaacaaagaatatttaaacataatatatatatataggaagaatatttgtt
aaatttgcttttcgtggttcataaggagatgtgtttcattatagtacgtgaagtaagatg
ggttgttgctgggcagctaaatttaagttttttagatcgtgttttgaacaattaacaacg
cacttttatagttgaaatcgcgagactaagggtatatattcatttttttataacagaatg
ggacaaaaaagagaattaaaacatattttactttataccgctatactctaactatgcaat
ggggaaagttgagttgtacaaggatagaagagacgagggtaacatatgactacttagttg
ttgacaacaaattgactaaaaagagacgaaatgattgtaatggttaaatccagagcagtg
cataaattaaatatgcggtttataattaactgagacgctttcgtccaagccgatcaataa
acaaaaaaaacatattattgtagtgacttatatagtagggcgggggaagatgggacacct
ttagcacacaatatctaaagatctttaccgtgttttaaacaattattaacggtctgtggg
agttgaaagcatacggtttaaataattctttgaatgctcgattgtttactaccaaatggt
acgagaaaaagaataaaaaggtgttccatcttctcccactctactatatatatgatacgt
ttaaaataatgctcatatatgatctgttggtttctacgtccgatacgaacacaatatgcg
aaatagttgtactatacgtctatcgtaattttgattagggcttttttattcattaattat
ttaagactaacatgggttcagatctcaagggattcgcgactttagaacattacagtgaca
attgcgatattataattagcagcgacgcaagtgcagaggtacatcctgtttaagccgccg
caatagtaagagtaccgctgcagattcctaggtcaagaacggaacttcgtaattttactc
attcttatgatgagcatgcaggccagcgagatgcatgagcgcgattttaattttcagtgt
aatttattttaaacattttatttctgtggcgatttttcttaagttcatttaagtttttat
tcaagcaccattggtaaagggagagactgaattttctgaacaatcgcgcaatatataaaa
tactataagattagtcattaaaaaaatatggtcgcgcaaaaaattaaataaatatttaaa
caacaatgaattgttgttgtagtggtactcagttttgcattcatatatgcgacgaacata
attgtatttatacatgcattgttgagtttttaattgcatggcgtttagatgttttattta
ttaatcgattttactcgcaacagtgccactcgacctcgaaattataggataacacactgc
agttacgagtgaatatatagcctgctggaactgcttgttagatatagactaaggaaggaa
taatgaaaatggatttcctttcaggacatgaatatcactaaccaacaaattcatcatcga
cacgacgaatcaatcttaagcaaagacaatcaaacagtaggtttttaaactaaagaggtt
tttgcagtataaccatataggtctatatatgagtattcttataggcattactttttaggt
gaacaattcgaatatggcattgactgacgaatcattgcaaacgattcgacttggtatagc
ggtggtgtacattctcatttgtgtgtttggtaagaatatatagtttaccttattgttgat
cgcatgcatgtctaaataaaagttttaaaaggataaattgagaaatccatcctatttttg
ttttgtttcttgcaaaattacttacaaagggcctaaatatataaactataaataataata
tatagtagggtgggggaagataagacaccttttacctctattttttcgccccgtttagta
gtaaacaaagaacattcgaaaaattataaaactatatggccattactcccattgaccgtt
agtatttgtttaaaacactttcaggatatttagatattaagtgctaaatgtgtcccatct
tttcccaccctactataatatacaagaatgccaaaatcatgcagctatactggaaataat
ggatttcccaaaccgcgtgttgaaacatgttcatacataattaattaagaagagatacaa
attaaagggcttttcggaaacgcc
