- Region 'REG00001199'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C9:473837-476282|GnRH
Short name
GnRH 2.5kb upstream
Region ID
REG00001199
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Philip Barron Abitua (2017-05-05)
Annotator
Marion Gueroult-Bellone (2017-05-05)
Curator
Delphine Dauga (2017-08-29)
473,837476,282
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [473,837 / 476,282] on scaffold KhC9
The GnRH enhancer was amplified from Ciona intestinalis genomic DNA using the following primers (KH.C9.484; 59-GTGTACGATTGACAAGTTGG-39 and 59-TGTTACGTTATCTCTCTAGAAG-39). It drives expression near the oral openning.
Show sequence
Length: 2,446
tgttacgttatctctctagaagagaaattcgaaaaataaattgaaactcttgttaataca
aattgaccagtagttggatttctacaaactggaatgactaacgatggtttattatatgct
gttgctgccacccatactttaatttatgtataagctattctgcgaactttgttggctata
gttttttcttttattcgacgagttatacaatgggacctgggacgtgggccagatttgtcc
ccgcattaccccacagtaatgcattgttacgcgcaaaatttaccagaacatctcctaatc
tttattttaaattcaaacacactgcttataccacatgcccagcacatccaactaactcat
attcacttttaattcgacttttattcttaaaagcaatcgcaataaactaatgcaatggca
acgtatcgagctttaacaaatctttatctttaataaaccaacatctgtcacaactaaacc
cgatattaaaaagaatgaaatcttaacgaaataaataaaagcgcttagaaaacctaatat
tttaatattgaaatggataagggtatagtatcttagtcccgcttagtttgcgttaagcat
ctttttcggggtccgataatctatatagtggggtggagtaagatgcttcgtgttttcatt
cttttttctcgtacaatttggaagttaaacaaaaaatatttatcgaactgtataacccgt
tcctaacgactttgaaagagcgttatttattgtttaaaacacgattaggtaattccggat
tcaggtgataaaggtatcccatctcaccccacagtatgtaacgacatgttacgacacata
gttagcaatattcctcagaccgctatacaggaatcaaaccaccacaaacaacaagacaag
tttatagcaaaatcactacgcaaacttattttaaaacaaaaaggcggattttattcagaa
gaccgttataccgataactctgcctaaccgagaaactggtctaattatattactcacgaa
caaaatatgcaaccccgaatttacgaaaagtcgcctatttgcaacactctctgtatgcag
atattctaactgggttgcagtttgtgcttatatagttttacacgggactccaattatacg
ctcgcctttcatgcattttaaattttattgcggtgccagtgagacgcagacgggcagaaa
atgcacaaacaaaccgaacaaaactaccccatgccgcaagcaaacgatctgaactgactc
ccgttgctcggatgagatgacccactgttttaccacatcaatgacgtaaatgatattgtg
accttctacatttgttgtcccaaaaggaatttcaaaagtcgatgttattggtaactacgt
caccacaagagcattattcgcgcatcgtgacgtaacaatatggagaatcgataaaacaat
ttgtgatgtcattatcctgcagcgaaattaatttcttggtagcttacgaacttatcttgg
agaaataactatggaaaagggtcgaatacttaaaggggggaggagataattttactcaaa
tcatttaaagtttttttaaaccaaggtggcagtttgtaaaggttgtttctgatgcgcata
atttcatggaaaatacatatagtagggtggggggagatgggacacctttagcacataata
tccaaatatcctgagcgtgtttaaaacacttaacaccagtctatgggagtagtgaggata
cggttttataattctttgaatgttatttgtttactatcaaatgggacgagaaaatagagg
taaaaggtgtcccatctttccctaccctactctataaacatcgcccaatacgtatgcacc
ggtattcttgattgattttaatttatttattccctcgtggtggataaacgactgttctaa
cacaggtattgggtttcatacgcttcgtgcttgcttgtatgttatataggtttggagaaa
gttgttttattatatgtggtgacaattcggcagctcaattctccgatttgatgccctaac
gagttttactttttaatcatataacaacagccgcccctgccttgattatcgagtatacgt
aatttggtaaagagaatcctccagaacatgagcttccgtgataaaacaagagatatgttt
tcagtaaatatctattctacctcgttaacaatgaaaacaagcacctcttgtcaaaagttc
attaaatattaatacaggacaaagggttggattttgctcatgatggatgtaccgcatgta
atcctagaaccagcaaccggtaggacatcatgctggtatcactttaattgttgcataaaa
tattcaaaagcggattttttgccaatattattgcactcgtcatgacgagatgacttttaa
accagcgtttatcctttaagagccttccaacttgtcaatcgtacac
