- Region 'REG00001192'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C6:1221781-1223468|Chordin
Short name
Chordin -1.7kb
Region ID
REG00001192
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Philip Barron Abitua (2017-03-23)
Annotator
Marion Gueroult-Bellone (2017-03-23)
Curator
Delphine Dauga (2017-08-29)
1,221,7811,223,468
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,221,781 / 1,223,468] on scaffold KhC6
Primers used to amplify Chordin 1.7kb upstream region :(KH.C6.145; 59-CGGTTACGTTAAGTTCGTGCG-39 and 59-CTTTGTTCCTGCTCGAAGTGAG-39)
Show sequence
Length: 1,688
cggttacgttaagttcgtgcgtagttttacataacgtaactctgccaggattttgttacg
tatatgttactaccaattaaagtgcaattagggatttatagccctgtggttcgtgcaaac
ttagtatacacacatgcatgcgtatagttgttcaatgcgtcaaaatagtgtcgatatttt
tttcgcggcaatgtcatattttaatgccatttatctttcaaagacggtctgccattttgg
gattttttgtccacatacggttaaaatatgtttattaatgttcaatttttttccttgtga
tacagtttcataacctgtacgttttcttttaaaaaaaaggatctttttctgtcgtttttt
tcaccatttttttactcttacttgcaaaaaaacggcgtctttgcgtattttgcgttaaat
tatgtccaagtatttattattacacatttctaacaaggttatagacgttttgtggcgtga
aacgtagtagacacgtatagtgtttttgtgtatacgcctcttactgtcgatgcttactgt
taagttataacattggcgttatacactgggacacatgatgtattcatacaccttatgctt
actgtcaagttataacatgggcgtcttattcaccagacacacatggcgtattcaaaacag
agctacaaggtaaacagtctgcatgatatactttaaccgactggagccttttctgcaaac
attttcccaaactcggattcccacggttggcccgctattccattgtccttgcatacagac
atctgttacgaaacggtctttgttgtgctattatgtcgaacacaatagcgtgtatgtctg
ttggtataattaggtaacggagcacgcgaatgctttattatgtaattagtaagacacgct
cattaaaaattaagataaccgaccgtggcaattggtttaacttaaaaaaaagattatttt
aagaattcaattttacggagccaccatagacttaaataattagactttaaatgttgtgcc
taaaatatattttacgcggtttttccgtggagcaagatggatactattaagcacataaca
ttttataatcatgtttttaacaatcaacaacattttatccaatcttaacaatcaacaaca
cacaatcatgtttttaacaatcaacaacattttaggaatcgcgaggatacggttatatgg
atctgtaaatgttcattgtttactattaatagggcgataaagcgaatgaaaacatggacc
atcttacctcagcctactataccacaatgacgtaataccttattcatttgtagatttact
atctcacgtcaccaaacacatgactcggccaaataaattcacacttttataaaataaata
ttccaccggattctgcacttggctagctgcaagttcggaaacgagttctgttacgtcaca
gcatgtaatatgacgtcacagcaggtaatgtgacgtcgtattggtgcagacacgcgcggc
ctgcccagtttttgcccacaaaggccattgtcccgaacctgctatcccgcttcgaggctc
cagtcggaattgtgacgtaataatgaaccgtgacgtcacgggaaaaaggctacgtcacag
tgggggtactttatctagggatctcgtagatttcaccatatcgaaatctcacttcgagca
ggaacaaa
