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CIS-REGULATION

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  1. Transcript 'KH2012:KH.C4.84.v1.A...'
  2. Transcript 'KH2012:KH.C12.156.v3...'
  3. Region 'REG00001414'
  4. Region 'REG00001185'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.C10:3146489-3146895

Short name

Meis_ciCNE6

Region ID

REG00001185

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Laura Doglio (2017-03-15)

Annotator

Marion Gueroult-Bellone (2017-03-15)

Curator

Delphine Dauga (2017-06-01)


Description

Overview of functional TF binding sites in this region

3,146,4893,146,895

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [3,146,489 / 3,146,895] on scaffold KhC10

This sequence is a non-coding element conserved between Ciona intestinalis and Ciona savignyi. Original comment : These Ciona conserved non-coding elements (ciCNEs) are associated with largely the same key regulatory genes as vertebrate CNEs.

Show sequence

Length: 407

AAATTAGCCGTCATCGGCGCCGTCAAAGACGTCACGTTGACGTATGAATTACGCAGTACA
ATCACGAATATTGGTAGGAATTTGGATCACTGGTCGCGGGGCCCGCCTAGGGACTTGTGT
ATTGTGTGAGGGGCTTTGTAGTGGCGGTGTCTCTGCTTCTAATCCCACCGCGCTCGTACA
AAGTGCTGCTTCCCAAGGATAGGGATAAAAGGCGACTGGGCTTCGTGGGAAGGCACGACT
CAGATCGATCCTTCGATCGTCGAATCTTGGAAGAAGATAATATACAGAGATACTTTTACA
TGGCGCACCGAGCAGACGAAAGCGCGCATTATCAGAGAAATATCATTTTAGAAAGCAGCG
AAGGTCGATACCGGGAAAATCAATGGATTTGTTGCAGGGCCTTGGAA