- Region 'REG00001185'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C10:3146489-3146895
Short name
Meis_ciCNE6
Region ID
REG00001185
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Laura Doglio (2017-03-15)
Annotator
Marion Gueroult-Bellone (2017-03-15)
Curator
Delphine Dauga (2017-06-01)
CONS00001167: pCES.Cirobu.REG.KH2012.C10:3146489-3146895:prCirobu.bpFoxAa>LacZ
3,146,4893,146,895
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [3,146,489 / 3,146,895] on scaffold KhC10
This sequence is a non-coding element conserved between Ciona intestinalis and Ciona savignyi. Original comment : These Ciona conserved non-coding elements (ciCNEs) are associated with largely the same key regulatory genes as vertebrate CNEs.
Show sequence
Length: 407
AAATTAGCCGTCATCGGCGCCGTCAAAGACGTCACGTTGACGTATGAATTACGCAGTACA
ATCACGAATATTGGTAGGAATTTGGATCACTGGTCGCGGGGCCCGCCTAGGGACTTGTGT
ATTGTGTGAGGGGCTTTGTAGTGGCGGTGTCTCTGCTTCTAATCCCACCGCGCTCGTACA
AAGTGCTGCTTCCCAAGGATAGGGATAAAAGGCGACTGGGCTTCGTGGGAAGGCACGACT
CAGATCGATCCTTCGATCGTCGAATCTTGGAAGAAGATAATATACAGAGATACTTTTACA
TGGCGCACCGAGCAGACGAAAGCGCGCATTATCAGAGAAATATCATTTTAGAAAGCAGCG
AAGGTCGATACCGGGAAAATCAATGGATTTGTTGCAGGGCCTTGGAA
