Aniseed - Cis-regulation

Region 'REG00001179'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.C14:653054-653318

Short name

PhoxB_ciCNE1

Region ID

REG00001179

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

n/a ()

Annotator

Marion Gueroult-Bellone (2017-03-15)

Curator

Delphine Dauga (2017-06-01)

View position in WashU

Description

Hierarchy of Regulatory Regions

Cirobu.REG.KH2012.C14:653054-653318 REG00001179 [ inactive_region ]

Regulated gene(s)

KH2012:KH.C14.100 (DRGX; PHOX2A; PHOX2B)

Construct(s) made to test this region

CONS00001161: pCES.Cirobu.REG.KH2012.C14:653054-653318:prCirobu.bpFoxAa>LacZ

Show in situ data

Overview of functional TF binding sites in this region

653,054653,318

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [653,054 / 653,318] on scaffold KhC14

This sequence is a non-coding element conserved between Ciona intestinalis and Ciona savignyi. Original comment : These Ciona conserved non-coding elements (ciCNEs) are associated with largely the same key regulatory genes as vertebrate CNEs.

Show sequence

Length: 265

AAACGAAATGCCAACGAGCAAAAGAAAACCTATTTCCACGCCTACCGACGCAAGAACGAC
AAATTACCACGTTTCAATTATAGTTTCCCCGAGCCAGCGTAAATAATAGCGAGCTTTGGC
GAAATCAAATTTTGTCGAGGGCTTACTGAACAAGAGAATAGATCAGAGAAGTGGTGACTT
GACAAATCCTAGGCTGGATTTTCTTCGTATGTTTCATCCTTACCAATACCGCACGCAAGC
TGCTGGTCGTAATGATAGGCTTTCG

Reference(s)

Doglio et al. (2013). Parallel evolution of chordate cis-regulatory code for development. PLoS Genet. 9(11):e1003904