- Region 'REG00001178'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C14:3781270-3781597
Short name
Otp_ciCNE1
Region ID
REG00001178
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Laura Doglio (2017-03-15)
Annotator
Marion Gueroult-Bellone (2017-03-15)
Curator
Delphine Dauga (2017-06-01)
CONS00001160: pCES.Cirobu.REG.KH2012.C14:3781270-3781597:prCirobu.bpFoxAa>LacZ
3,781,2703,781,597
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [3,781,270 / 3,781,597] on scaffold KhC14
This sequence is a non-coding element conserved between Ciona intestinalis and Ciona savignyi. Original comment : These Ciona conserved non-coding elements (ciCNEs) are associated with largely the same key regulatory genes as vertebrate CNEs.
Show sequence
Length: 328
AGTCATAGCCGGTTAGATACGTCGACGTCGTTTACGGGCAAATTTCTGCGATTAATTTTC
GTGAATTTTATTTCCGTACGACGCCTCTGTTTCAAGCTAAACTTTAGTCTTCCATTTGTC
TGTTTATATCAAAGCAGTTTGACTTCGATCTTCGACAGGCCATTGACAGTCATACCCAAA
TCAATACACCCTCGGCGAAGGGAATATTTACACGCGAAATAATACGCAGAAAATTTCATA
AATATTTAATTAAATAATTCAACTTATGACAATAAATATTCTAAAAAAAGACGATTTTTT
TTAACCGTAATTGCTCTAATAAAGAAAT
