Aniseed - Cis-regulation

Clone 'cijv027p03' >
Region 'REG00001176'

Cis-regulatory Region

Name

Cirobu.REG.KH2012.C10:3629974-3630273

Short name

Nkx_ciCNE2

Region ID

REG00001176

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(enhancer)

Author

Laura Doglio (2017-03-15)

Annotator

Marion Gueroult-Bellone (2017-03-15)

Curator

Delphine Dauga (2017-06-01)

View position in WashU

Description

Hierarchy of Regulatory Regions

Cirobu.REG.KH2012.C10:3629974-3630273 REG00001176 [ regulatory_region (enhancer) ]

Regulated gene(s)

KH2012:KH.C10.126 (KH.C10.126)

Construct(s) made to test this region

CONS00001158: pCES.Cirobu.REG.KH2012.C10:3629974-3630273:prCirobu.bpFoxAa>LacZ

Show in situ data

Overview of functional TF binding sites in this region

3,629,9743,630,284

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [3,629,974 / 3,630,284] on scaffold KhC10

This sequence is a non-coding element conserved between Ciona intestinalis and Ciona savignyi. Original comment : These Ciona conserved non-coding elements (ciCNEs) are associated with largely the same key regulatory genes as vertebrate CNEs.

Show sequence

Length: 311

ATATCTATCCGATTTCACGTTACAGGTTTGTGAAAATTATTCTTGCTTTATTTTGCATTA
AACCGGGCAATTGTTACGTATCCGGAGAAACAATCACGACAACCAAAATACACAGAAAGC
AAATAAACTCTGACAGGCCGTGTGACTTCCACGCTAGAGTTGTCTTAAGCTCACACCAAT
CAGTGATATCAAAGAGGGCTCTATGACATCATAATACGGAGTCTGGAACTTGTTGGCATA
AGCGCTTTGTGGCCCAAACTTTCAGCACCCGAATCCGTATAGCTCACAAAACGGCTATAC
CATCCAATCAT

Reference(s)

Doglio et al. (2013). Parallel evolution of chordate cis-regulatory code for development. PLoS Genet. 9(11):e1003904