- Region 'REG00001174'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C4:4328156-4328477
Short name
Otx_ciCNE1 - KH.C4.84
Region ID
REG00001174
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Laura Doglio (2017-03-15)
Annotator
Marion Gueroult-Bellone (2017-03-15)
Curator
Delphine Dauga (2017-06-01)
CONS00001156: pCES.Cirobu.REG.KH2012.C4:4328156-4328477:prCirobu.bpFoxAa>LacZ
4,328,1564,328,477
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,328,156 / 4,328,477] on scaffold KhC4
This sequence is a non-coding element conserved between Ciona intestinalis and Ciona savignyi. Original comment : These Ciona conserved non-coding elements (ciCNEs) are associated with largely the same key regulatory genes as vertebrate CNEs.
Show sequence
Length: 322
CATTGAGTGCTGGGCAAAGTTTCCCTGTCGTGTTGAAGAGAAGTGGTTTGGATTAAACAC
ACTTCAGACGTGTGAAAATTCGAGTTGGTTTCAAAAACAAAGTGCGAACGGTAGCGCAAA
GAGCGTCGTTGTTGTGACACTGCGCTCGTTCCCAAGCCAGCTCGTATAATAGAAAAACAT
AAACGCGAAACCTCAAGCAGGTACTCCATCAGGTCCATTCACATAAGCAGCTACTTGGAC
ATTTTCGCACCTTCTATAATGGGCTTGCCAGCGCTTTGTGATCGATCGGGGCCAACTGAA
ATAGGCTCGTTAACCGTGAACG
