- Region 'REG00001173'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C9:5706824-5707336
Short name
Pax6_CiCNE2 - KH.C9.68
Region ID
REG00001173
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(enhancer)
Author
Laura Doglio (2017-03-15)
Annotator
Marion Gueroult-Bellone (2017-03-15)
Curator
Delphine Dauga (2017-06-01)
Modification of Ci-Pax6 -0.2kb/+1kb +3.7kb/7kb by deletion
- Ci-Pax6 -2500/7000 REG00000404 [ no_output ]
- Ci-Pax6 -1.8kb/+1kb REG00000408 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.6kb/+1kb REG00000411 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/2600 REG00000412 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.2kb/+2.6kb REG00000413 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/7000 delta 2600/3700 REG00000414 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -1.8kb/+1.5kb REG00000415 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -1.8kb/+1kb 1.7kb/2kb REG00000416 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -2500/7000 delta 1000/3700 REG00000417 [ regulatory_region (extended_promoter) ]
- Ci-Pax6 -0.2kb/+1kb +3.7kb/7kb REG00000418 [ regulatory_region (extended_promoter) ]
CONS00001155: pCES.Cirobu.REG.KH2012.C9:5706824-5707336:prCirobu.bpFoxAa>LacZ
5,706,8245,707,336
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [5,706,824 / 5,707,336] on scaffold KhC9
This sequence is a non-coding element conserved between Ciona intestinalis and Ciona savignyi. Original comment : These Ciona conserved non-coding elements (ciCNEs) are associated with largely the same key regulatory genes as vertebrate CNEs.Furthermore, this ciCNE is able to activate reporter gene expression in both zebrafish and Ciona embryos, in a pattern that at least partially overlaps that of the gene they associate with, despite the absence of sequence identity.
Show sequence
Length: 513
TTGCCTCTCTAAAATAATTACGTTGAGCTTAAACCATCAACGGGTCTCTGGTTTCCATTA
GTTGAAAAAATAAAAACTATTTCCCGACCACTGACAGCCGTATTAATGATTAATTGGACG
GGATTTCAAGACGATTCCCGAGCCGCGTTCGAAAATAAATAATAAAAGCTCTTTGGATCT
CTCGCCCCGTCGCGTCACGTAAAGATCCGTCGACCGCAACCGGCCAGCCCAGCCCCGCAT
TTCCTATCTGACGCTGCAGCTAATTCCAAGATAAACCGAGTTATTATGAATCAAGTTGCA
CCGCGATCGATACCGGCGTGTCATCGATCCGTCGGCGGGCTCTCGACGACCAAAAACCCC
GCCGAAGTTTCGCTTAAAACCCGGCCTACTCGATTATGAGCGATCGATTTTGGAGAGAAT
GAAAGACATCCGTGACACGGCCAGAGCTAAGTAGTTTGTTAGCGAATTCTGTTGACATTC
CGTAGCTTGCAACATAACTCTATTTCAAGCCTG
