- Region 'REG00001127'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C2:1982340-1982969|Admp
Short name
Admp (-623pb)
Region ID
REG00001127
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Izumi Oda-Ishii (2017-01-31)
Annotator
Marion Gueroult-Bellone (2017-09-03)
Curator
Marion Gueroult-Bellone (2018-03-13)
623pb upstream Admp TSS. It drives reporter expression specifically in the posterior vegetal hemisphere.
Modification of Cirobu.REG.KH2012.C2:1982040-1982969|Admp by deletion
1,982,3401,982,969
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,982,340 / 1,982,969] on scaffold KhC2
Sequence retrieved via the tool BLAST of Aniseed, thanks to the supporting information of the article (S5 Fig.)
Show sequence
Length: 630
gcgtggattgcgtgcattttgatgcggttgcatcttagaccaagacgaattaattaggaa
agagacacaaattacctttcggtacagaatgatacgtgcaaattacctttctcgacgtgg
ttatcggagttaattggcttgcgcttgtaatccgtcgaaaaaggccgcaagctgttattg
tttgctgcttgaggtgtgaatcggccgtgtaatttgtgcacccggttcgatcttcggcca
gctgccaaccaggttggattactcatcaaacatgatcaaggaaagattctctcccttctt
tcttcgagaaaagtgcacttaccgattcaacttttcgatcgcattttcgccagagctttc
tgagtgcaggtgtatggtcgactggtttggtttttgaggacccctagagtgcttaccacc
gcaacactgataacgtgttatctacggtttacggacaactgctgcgctgctcgttctctc
ggtctacgctcgtcgtatgtttgcgaattttcgtacatccggagatcaaatatcagcggg
tgattgaatgatcggtccgatttaagtgacaggacttcaccgacagcacagtagataagc
ggagcagaagaatttggacactcACATTGA
