- Region 'REG00001125'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C2:1981663-1982969|Admp
Short name
Admp (-1300pb)
Region ID
REG00001125
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Izumi Oda-Ishii (2017-01-31)
Annotator
Marion Gueroult-Bellone (2017-09-03)
Curator
Marion Gueroult-Bellone (2018-03-13)
1.3kb upstream Admp TSS. This region drives reporter expression specifically in the posterior vegetal hemisphere.
1,981,6631,982,969
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,981,663 / 1,982,969] on scaffold KhC2
Sequence retrieved via the tool BLAST of Aniseed, thanks to the supporting information of the article (S5 Fig.)
Show sequence
Length: 1,307
gctctccaagcaatcgatctgttttcttaaaagctgatcagcgcgccgacaccgagacaa
tgcaaatgggcattttagaaactgcctggcactccgagctcaagtgttttgattccagga
ttgcgttcagtttcttattattctattttgtattcaagacccatttacaccggcgcctat
ttttcgagtgcagcaccaggtgtgggatgtcaacgtaacaattagattgttacgttgtgt
tgacgtcgactaccggtccacggcaacccgaatgttccctccgggtggcaaaattttaca
cctgcttacgccttgtttatatctaagcattatgtaaagaatcttatagtttattgttta
ttttatttttttaaatatacaaatagttaaatttaaacaacctacgggaataaaaacaat
tcggaaaaaaaagaatatatctgcctgctgcgcagtctatttcaaaatcatttcacttag
aaacgaaaccgaaaatgatgcaatgcattttattacatctgaaaggaaacgacagaaaca
tttttgctttcactaaaacgatttaaccaattttaatattaaaaatgtaaaaataagaaa
tacttaaacttcattaatgaaaaaatgcaacaattgaattgggctttgtataattagtat
tgtcacgcatgatgctcgcgtggattgcgtgcattttgatgcggttgcatcttagaccaa
gacgaattaattaggaaagagacacaaattacctttcggtacagaatgatacgtgcaaat
tacctttctcgacgtggttatcggagttaattggcttgcgcttgtaatccgtcgaaaaag
gccgcaagctgttattgtttgctgcttgaggtgtgaatcggccgtgtaatttgtgcaccc
ggttcgatcttcggccagctgccaaccaggttggattactcatcaaacatgatcaaggaa
agattctctcccttctttcttcgagaaaagtgcacttaccgattcaacttttcgatcgca
ttttcgccagagctttctgagtgcaggtgtatggtcgactggtttggtttttgaggaccc
ctagagtgcttaccaccgcaacactgataacgtgttatctacggtttacggacaactgct
gcgctgctcgttctctcggtctacgctcgtcgtatgtttgcgaattttcgtacatccgga
gatcaaatatcagcgggtgattgaatgatcggtccgatttaagtgacaggacttcaccga
cagcacagtagataagcggagcagaagaatttggacactcACATTGA
