- Region 'REG00001118'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C3:6291540-6292308|Lefty
Short name
Lefty (-769pb)
Region ID
REG00001118
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Izumi Oda-Ishii (2017-01-31)
Annotator
Marion Gueroult-Bellone (2017-09-03)
Curator
Marion Gueroult-Bellone (2018-03-13)
The 769 bp upstream sequence of Lefty TSS is sufficient for specific expression in the vegetal hemisphere.
6,291,5406,292,308
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [6,291,540 / 6,292,308] on scaffold KhC3
Sequence retrieved thanks to the supporting information of the article (S4 Fig.).
Show sequence
Length: 769
atcccaccctgagatgcggcgacttatataccggcagtggtcgtctgcttatctcaaagt
agaaacaataacattttctttttgtcttcgtcactttgaagcgggtgttccagacaaaag
tcgttattgcgaactccgaccagataacgctataaacgacgatagttgccagacacaaag
gatgagacaatagaaagcttgcaccgctattattgttcaatcaacgaaagtgagcgcacc
aaacaaaggaattgtcgcaaatttctttcagtaacaattaccgcaactttgttcgggatt
aattagaaacaacgatcaaataattcatatttagaacaattttaagatgcaaaataaatt
tctggtttaaagtgaaaatatgtatagtagggtagggaaaaataggacacctttagcaca
caatacccaaatattctaatcgtgttttaaacaattaacaacggtctatgagaattgtga
ggatatggttctatatttctttgaacaatctttgattaccaccgaatgcgacgggaaaat
aaaaggtgtcccatcttcacaaactatagtttatactatatagggtaaaactattgtgaa
gatgggacacctttttattttattttcccgtcgcatttggtgataatcaaagactgttca
aagaattataaaaccatatcctcacaattactacatactatgtagtagggtaaaacacaa
aagtatccaaacagtttgaactttatttagtaatactgtagtaacaaca
