- Region 'REG00001116'
Cis-regulatory Region
Name
Cirobu.REG.KH2012.C8:2621913-2622953|Foxd.b
Short name
Foxd.b (-1041pb)
Region ID
REG00001116
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
inactive_region
Author
Izumi Oda-Ishii (2017-01-31)
Annotator
Marion Gueroult-Bellone (2017-09-03)
Curator
Marion Gueroult-Bellone (2018-03-13)
This 1kb region located upstream Foxd.b has no enhancer activity. It lacks a 200pb enriched in Tcf7 binding sites compared to the active enhancer -1241pb.
Modification of Cirobu.REG.KH2012.C8:2621713-2622953|Foxd.b by deletion
2,621,9132,622,953
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,621,913 / 2,622,953] on scaffold KhC8
Sequence retrieved via the tool BLAST of Aniseed, thanks to the supporting information of the article (S4 Fig.)
Show sequence
Length: 1,041
tcgatcttttcatctttatctcggttgaattgatttgtcgtgaataaattgggaagttgt
gtcgattggaacatcagttgcaagaatgagttgaacagttggtccaattcaaacgttact
tgcagtaaaacttgtgtggacaagttataacttaatacgaggtgtatataaagtcgttag
aattttacgaatcagttgacaaatataaataaaggtacaggtagttttgttgaacattgc
gacagtctgactgtgttttcagtttcgctaaatttctcgtacggtaaaattgtttactaa
aaaataagggcgtacgtaaatcaattctgggttgggtagctttaagcattacaataacgt
acatattgcctgtttacaaatatagcagttatatttaaatatatactaagaataaaggtg
cagctcattcaaatttaatcgctttaccgattctctcaattaagaataggagaaaacgcg
tatttagataacatttaacgggaaacgactacagtcctaatattggaactacagacgttc
aataaactcgttagcttgacatttatttcaatactgtttgtgttacgtcacgggtatttt
tgagtcattattttaacgattggtcggattatttgaaaacctttaccacagtgtgttgtt
agaaaatagacgccatttttaccagcggaaccagcattttgccaaattcaaatttaataa
tttttttcagttgttttcaacattttgggacacttctcaaaaaagcgaaatgttttttat
gaaactcagtttttaaaaacagcgaaaacacgcatatttttgaacgcaaccattaatcga
ttaagttggacgtttttcttgtaaatgataaattaattagccttcttcttttgcttagaa
aacattgtaatataatcttttgaaaaatctgttgctgatcaacggaattataaacgagat
ctaggattcgaagaaaaaagcggttgctgggagaattgaagaagtggatttgaataaatt
gtcgcgttttgcaaagtgctc
