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CIS-REGULATION

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  1. Region 'REG00000203' > 
  2. Region 'REG00001027' > 
  3. Region 'REG00000198' > 
  4. Transcript 'KH2012:KH.C1.44.v1.A...' > 
  5. Region 'REG00001032'

Cis-regulatory Region

Name

Cirobu.REG.KH2013:KH.C6.1851000-1851424

Short name

Ci-Fz4(-387/+38)

Region ID

REG00001032

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Fujiwara team (2015-08-31)

Annotator

Shigeki Fujiwara (2015-08-31)

Curator

Delphine Dauga (2018-04-17)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2013:KH.C6.1850603-1851424 by deletion

Regulated gene(s)

KH2012:KH.C6.162 (FZD10; FZD4; FZD9)

Construct(s) made to test this region

CONS00001001: pCirobu.REG.KH2013:KH.C6.1851000-1851424>NLSLacZ

Show in situ data
Overview of functional TF binding sites in this region

1,851,0001,851,424

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,851,000 / 1,851,424] on scaffold KhC6

The DNA fragment contains 387-bp 5' upstream region, 5' UTR and 2-bp coding region.

Show sequence

Length: 425

TATCCTCACCACTGTTAAGATCGTTGTTATTTGTTAAAAACGCGATTAGGAAATATGAGA
TATTATGTTCTAACGGTATCCATCTACCCGACCTACTACACGTTCTCCAACCCAGTATGC
CCTACTACAGTGCGTGAGATGATAAGACAGTAGGGCATACACCTGGTAACAGCGGGTGTT
TAGTAAAGATCAACCTTTTTCCAATGCACGTTGTCTTAGTACAGGTTTATTTAGTTTTGC
GTTTAGGAAATTAGTTTGCAAGTGAAAAGCGCGTTGTTGTTTTAATGTATTTATTTTATC
TTACTTTGAATTGAGAAAAGGGTTATTTGTTGCAGATTTGTGTATATACTTTGTTATGGC
ATATATTTAAAACTGTGTTTCCTACAGGTTGTTTGAGTGCTAAGTAAAATTGTATAATTG
GACAT

Reference(s)

Horikawa et al. (2013). Transcriptional regulation in the early ectodermal lineage of ascidian embryos. Dev. Growth Differ. 55(9):776-85

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