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CIS-REGULATION

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  1. Transcript 'KH2012:KH.C4.547.v1....'
  2. Transcript 'KH2012:KH.C1.1144.v1...'
  3. Transcript 'KH2012:KH.C5.25.v1.A...'
  4. Transcript 'Harore.CG.MTP2014.S4...'
  5. Region 'REG00001031'

Cis-regulatory Region

Name

Cirobu.REG.KH2013:KH.C6.1850603-1851424

Short name

Ci-Fz4(-784/+38)

Region ID

REG00001031

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Fujiwara team (2015-08-31)

Annotator

Shigeki Fujiwara (2015-08-31)

Curator

Delphine Dauga (2018-04-17)


Description

Overview of functional TF binding sites in this region

1,850,6031,851,424

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,850,603 / 1,851,424] on scaffold KhC6

The DNA fragment contains 784-bp 5' upstream region, 5' UTR and 2-bp coding region.

Show sequence

Length: 822

AACAATAGAGATTGTGACGCCACAGATAACAATTGCAGAAACTCGCGACCGCGAATTGCA
TTATCTGATAATCACTTTCTATTATGACGTAACACTTGCAGATCGTAGAGAAAAGAGGAC
GAGCTGGTTCTATTTAAATACAAAGCAAGTCGAAAGTGTTGGCAGCCAGTGTATGAAGTA
AGGATCAACTGTCTTATAGTAGGTTAAGGTAAAATATTCCCATGTTTTTATTCTCTTTTC
TACGGCGCGCGCATTTGCACCAATGCTAAGGATGGGAGCATACAAGTTTAGGTGTGAATA
ACATAATATATGGTGGGGTAAGATGGAACACGTTTTCATTCTCTTATTTCGTCCTATTTG
GTGGTAAACAAAGAATATTTAAGGAACTACATAACCGTATCCTCACCACTGTTAAGATCG
TTGTTATTTGTTAAAAACGCGATTAGGAAATATGAGATATTATGTTCTAACGGTATCCAT
CTACCCGACCTACTACACGTTCTCCAACCCAGTATGCCCTACTACAGTGCGTGAGATGAT
AAGACAGTAGGGCATACACCTGGTAACAGCGGGTGTTTAGTAAAGATCAACCTTTTTCCA
ATGCACGTTGTCTTAGTACAGGTTTATTTAGTTTTGCGTTTAGGAAATTAGTTTGCAAGT
GAAAAGCGCGTTGTTGTTTTAATGTATTTATTTTATCTTACTTTGAATTGAGAAAAGGGT
TATTTGTTGCAGATTTGTGTATATACTTTGTTATGGCATATATTTAAAACTGTGTTTCCT
ACAGGTTGTTTGAGTGCTAAGTAAAATTGTATAATTGGACAT