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CIS-REGULATION

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  1. Region 'REG00001016' > 
  2. Region 'REG00001029'

Cis-regulatory Region

Name

Cirobu.REG.KH2013:KH.C6.1850093-1851424

Short name

Ci-Fz4(-1294/+38)

Region ID

REG00001029

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Fujiwara team (2015-08-31)

Annotator

Shigeki Fujiwara (2015-08-31)

Curator

Delphine Dauga (2018-04-17)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2013:KH.C6.1849962-1851424 by deletion

Regulated gene(s)

KH2012:KH.C6.162 (FZD10; FZD4; FZD9)

Construct(s) made to test this region

CONS00000998: pCirobu.REG.KH2013:KH.C6.1850093-1851424>NLSLacZ

Show in situ data
Overview of functional TF binding sites in this region

1,850,0931,851,424

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,850,093 / 1,851,424] on scaffold KhC6

The regulatory region contains 1294-bp 5' flanking region, 5' UTR and 2-bp coding region.

Show sequence

Length: 1,332

TATCTATCGTCATGACCCATAAATTGGTTATTACTGTCAAATAGATAGCGTTTGATGTTA
CCAGTATTTTAGGTCGCTGCGGTATTTTCAACTGGTTAGTGGTGTTACACCAAATTCGCT
TTTTCGCGAAAACTGCTTTGGTTACTTCACGGTTCGATGCGTAAACGTAAATTATGGCTC
GTTACGTCACAATTGGCTTTGTTTACGTGGCCAAGCGGAAACGATGACGAAATTATATGA
AATTCATTTTCATTATTTTTTGTTAAAATTATAATTTTTCAGTGAAACTTTGTAGCTTTA
TTACAGAATTCTATATATGTATCTTCACGGTTCTAACACAGCGTTGTTTATTTCTTAAAT
CGCGATTGGGGATTATGGGATATTATGTGCCAACGGTATCCATGTTACCCAACAGTACTA
TATTAAATATTTTGATTTGATTTTGAGACTTTCTGCAAACTAAAGATTGCTTATCGTTTC
CGTTACTTGACGTCATCATTTTGTTTCGTAAACAATAGAGATTGTGACGCCACAGATAAC
AATTGCAGAAACTCGCGACCGCGAATTGCATTATCTGATAATCACTTTCTATTATGACGT
AACACTTGCAGATCGTAGAGAAAAGAGGACGAGCTGGTTCTATTTAAATACAAAGCAAGT
CGAAAGTGTTGGCAGCCAGTGTATGAAGTAAGGATCAACTGTCTTATAGTAGGTTAAGGT
AAAATATTCCCATGTTTTTATTCTCTTTTCTACGGCGCGCGCATTTGCACCAATGCTAAG
GATGGGAGCATACAAGTTTAGGTGTGAATAACATAATATATGGTGGGGTAAGATGGAACA
CGTTTTCATTCTCTTATTTCGTCCTATTTGGTGGTAAACAAAGAATATTTAAGGAACTAC
ATAACCGTATCCTCACCACTGTTAAGATCGTTGTTATTTGTTAAAAACGCGATTAGGAAA
TATGAGATATTATGTTCTAACGGTATCCATCTACCCGACCTACTACACGTTCTCCAACCC
AGTATGCCCTACTACAGTGCGTGAGATGATAAGACAGTAGGGCATACACCTGGTAACAGC
GGGTGTTTAGTAAAGATCAACCTTTTTCCAATGCACGTTGTCTTAGTACAGGTTTATTTA
GTTTTGCGTTTAGGAAATTAGTTTGCAAGTGAAAAGCGCGTTGTTGTTTTAATGTATTTA
TTTTATCTTACTTTGAATTGAGAAAAGGGTTATTTGTTGCAGATTTGTGTATATACTTTG
TTATGGCATATATTTAAAACTGTGTTTCCTACAGGTTGTTTGAGTGCTAAGTAAAATTGT
ATAATTGGACAT

Reference(s)

Horikawa et al. (2013). Transcriptional regulation in the early ectodermal lineage of ascidian embryos. Dev. Growth Differ. 55(9):776-85

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