Aniseed - Cis-regulation

Cis-regulatory Region

Name

Cirobu.REG.KH2013:KH.C6.1849962-1851424

Short name

Ci-Fz4(-1425/+38)

Region ID

REG00001028

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Fujiwara team (2015-08-31)

Annotator

Shigeki Fujiwara (2015-08-31)

Curator

Delphine Dauga (2018-04-17)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2013:KH.C6.1849423-1851424 by deletion

Cirobu.REG.KH2013:KH.C6.1849423-1851424 REG00001027 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KH2013:KH.C6.1849962-1851424 REG00001028 [ regulatory_region (extended_promoter) ]
  - Cirobu.REG.KH2013:KH.C6.1850093-1851424 REG00001029 [ regulatory_region (extended_promoter) ]
    - Cirobu.REG.KH2013:KH.C6.1850412-1851424 REG00001030 [ regulatory_region (extended_promoter) ]
      - Cirobu.REG.KH2013:KH.C6.1850603-1851424 REG00001031 [ inactive_region ]
        
        Cirobu.REG.KH2013:KH.C6.1851000-1851424 REG00001032 [ inactive_region ]

Regulated gene(s)

KH2012:KH.C6.162 (FZD10; FZD4; FZD9)

Construct(s) made to test this region

CONS00000997: pCirobu.REG.KH2013:KH.C6.1849962-1851424>NLSLacZ

Show in situ data

Overview of functional TF binding sites in this region

1,849,9621,851,424

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [1,849,962 / 1,851,424] on scaffold KhC6

The DNA fragment contains 1425-bp 5' upstream region, 5' UTR and 2-bp coding region.

Show sequence

Length: 1,463

CCCTTCTCTTCGTTGTTTCAATAACTTTGATCATCGCTACTGTAAATCATACAATGAGTT
TATGTTATGTTTTATTGTTTTACACGTTGAAATAAGATTAATTTACACCATCTAAGTTTC
TCTGGCTTATTTATCTATCGTCATGACCCATAAATTGGTTATTACTGTCAAATAGATAGC
GTTTGATGTTACCAGTATTTTAGGTCGCTGCGGTATTTTCAACTGGTTAGTGGTGTTACA
CCAAATTCGCTTTTTCGCGAAAACTGCTTTGGTTACTTCACGGTTCGATGCGTAAACGTA
AATTATGGCTCGTTACGTCACAATTGGCTTTGTTTACGTGGCCAAGCGGAAACGATGACG
AAATTATATGAAATTCATTTTCATTATTTTTTGTTAAAATTATAATTTTTCAGTGAAACT
TTGTAGCTTTATTACAGAATTCTATATATGTATCTTCACGGTTCTAACACAGCGTTGTTT
ATTTCTTAAATCGCGATTGGGGATTATGGGATATTATGTGCCAACGGTATCCATGTTACC
CAACAGTACTATATTAAATATTTTGATTTGATTTTGAGACTTTCTGCAAACTAAAGATTG
CTTATCGTTTCCGTTACTTGACGTCATCATTTTGTTTCGTAAACAATAGAGATTGTGACG
CCACAGATAACAATTGCAGAAACTCGCGACCGCGAATTGCATTATCTGATAATCACTTTC
TATTATGACGTAACACTTGCAGATCGTAGAGAAAAGAGGACGAGCTGGTTCTATTTAAAT
ACAAAGCAAGTCGAAAGTGTTGGCAGCCAGTGTATGAAGTAAGGATCAACTGTCTTATAG
TAGGTTAAGGTAAAATATTCCCATGTTTTTATTCTCTTTTCTACGGCGCGCGCATTTGCA
CCAATGCTAAGGATGGGAGCATACAAGTTTAGGTGTGAATAACATAATATATGGTGGGGT
AAGATGGAACACGTTTTCATTCTCTTATTTCGTCCTATTTGGTGGTAAACAAAGAATATT
TAAGGAACTACATAACCGTATCCTCACCACTGTTAAGATCGTTGTTATTTGTTAAAAACG
CGATTAGGAAATATGAGATATTATGTTCTAACGGTATCCATCTACCCGACCTACTACACG
TTCTCCAACCCAGTATGCCCTACTACAGTGCGTGAGATGATAAGACAGTAGGGCATACAC
CTGGTAACAGCGGGTGTTTAGTAAAGATCAACCTTTTTCCAATGCACGTTGTCTTAGTAC
AGGTTTATTTAGTTTTGCGTTTAGGAAATTAGTTTGCAAGTGAAAAGCGCGTTGTTGTTT
TAATGTATTTATTTTATCTTACTTTGAATTGAGAAAAGGGTTATTTGTTGCAGATTTGTG
TATATACTTTGTTATGGCATATATTTAAAACTGTGTTTCCTACAGGTTGTTTGAGTGCTA
AGTAAAATTGTATAATTGGACAT

Reference(s)

Horikawa et al. (2013). Transcriptional regulation in the early ectodermal lineage of ascidian embryos. Dev. Growth Differ. 55(9):776-85