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CIS-REGULATION

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  1. Clone 'cima878585' > 
  2. Transcript 'KH2012:KH.C9.53.v10....' > 
  3. Region 'REG00001025' > 
  4. Region 'REG00001026'

Cis-regulatory Region

Name

Cirobu.REG.KH2013:KH.C4.1882064-1882173

Short name

Ci-TgfNA(-66/+44)

Region ID

REG00001026

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Fujiwara team (2015-08-29)

Annotator

Shigeki Fujiwara (2015-08-29)

Curator

Delphine Dauga (2018-04-17)

View position in WashU

Description

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2013:KH.C4.1881926-1882173 by deletion

Regulated gene(s)

KH2012:KH.C4.547 (BMP2; BMP4; GDF5)

Construct(s) made to test this region

CONS00000995: pCirobu.REG.KH2013:KH.C4.1882064-1882173>NLSLacZ

Show in situ data
Overview of functional TF binding sites in this region

1,882,0641,882,173

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [1,882,064 / 1,882,173] on scaffold KhC4

The regulatory region was obtained from Kyoto individual.

Show sequence

Length: 110

TTATCAGCAAAAAAAGTTGAGTTAGTGTTGGCAGTTTAATAATACTGAGCCGTTGAAAGT
GTTGGGTTAAAGATGCATCGAATACTGCTAGCTGGTTTGTGTTTATTCGT

Reference(s)

Horikawa et al. (2013). Transcriptional regulation in the early ectodermal lineage of ascidian embryos. Dev. Growth Differ. 55(9):776-85

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