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CIS-REGULATION

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  1. Region 'REG00001028' > 
  2. Clone 'cicl054c14' > 
  3. Region 'REG00000206' > 
  4. Transcript 'KH2012:KH.C1.44.v1.A...' > 
  5. Region 'REG00001018'

Cis-regulatory Region

Name

Cirobu.REG.KH2013:KH.C3.2806725-2807113

Short name

Ci-ephrinAd(-333/+56)

Region ID

REG00001018

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

inactive_region

Author

Fujiwara team (2015-08-28)

Annotator

Shigeki Fujiwara (2015-08-28)

Curator

Delphine Dauga (2018-04-17)

View position in WashU

Description

The regulatory region contains 333-bp 5' flanking region, 5' UTR and 5-bp coding region. The DNA fragment was fused in frame with the translated region of lacZ.

Hierarchy of Regulatory Regions

Modification of Cirobu.REG.KH2013:KH.C3.2806725-2807177 by deletion

Regulated gene(s)

KH2012:KH.C3.716 (EFNA1; EFNA4; EFNA5)

Construct(s) made to test this region

CONS00000988: pCirobu.REG.KH2013:KH.C3.2806725-2807113>NLSLacZ

Show in situ data
Overview of functional TF binding sites in this region

2,806,7252,807,113

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [2,806,725 / 2,807,113] on scaffold KhC3

Show sequence

Length: 389

TGCGAGCATAAATATTATGATAAGCTGGACTCTCGATTGGTCAGACGAGAAATAGCGAAC
AGCGACCGAAAAAAAGAGAAGAAGTCCGTAATTTGTATGGCTTTATAGCGGTCGACTCTC
TACCGCAAATCAGTGTATCTCGGTTCGCAGAGTAAGCAGCTTACAGTTTCGTGAGACCGA
ATTCAACGCAGTTCGATTAAATAAGTTGATAGCGTCTAATCGTTTGTATTTTATAATACC
ACAAGCTCAGTAAGAATAAATGTCAACCAGTTTGATTTTTAGAAGTAAAGGCTTATAGTA
TTTCAGTTATCTAAATATGTGTTTACTTTTCAGATCCTAAAAATAGTATAAAATTGAAAG
CATAGTTTTATATTAAAACGAAGAATGGC

Reference(s)

Horikawa et al. (2013). Transcriptional regulation in the early ectodermal lineage of ascidian embryos. Dev. Growth Differ. 55(9):776-85

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