- Clone 'cien203265' >
- Region 'REG00001017'
Cis-regulatory Region
Name
Cirobu.REG.KH2013:KH.C3.2806725-2807177
Short name
Ci-ephrinAd(-397/+56)
Region ID
REG00001017
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Fujiwara team (2015-08-28)
Annotator
Shigeki Fujiwara (2015-08-28)
Curator
Delphine Dauga (2018-04-17)
The regulatory region contains 397-bp 5' flanking region, 5' UTR and 5-bp coding region. The DNA fragment was fused in frame with the translated region of lacZ.
Modification of Cirobu.REG.KH2013:KH.C3.2806725-2807227 by deletion
CONS00000987: pCirobu.REG.KH2013:KH.C3.2806725-2807177>NLSLacZ
2,806,7252,807,177
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,806,725 / 2,807,177] on scaffold KhC3
Show sequence
Length: 453
ATACCGTTATCACCAATACTCTGCAAATCGTGGGCGCCAAGCTAATAAGCAGATAAGGGA
CGAGTGCGAGCATAAATATTATGATAAGCTGGACTCTCGATTGGTCAGACGAGAAATAGC
GAACAGCGACCGAAAAAAAGAGAAGAAGTCCGTAATTTGTATGGCTTTATAGCGGTCGAC
TCTCTACCGCAAATCAGTGTATCTCGGTTCGCAGAGTAAGCAGCTTACAGTTTCGTGAGA
CCGAATTCAACGCAGTTCGATTAAATAAGTTGATAGCGTCTAATCGTTTGTATTTTATAA
TACCACAAGCTCAGTAAGAATAAATGTCAACCAGTTTGATTTTTAGAAGTAAAGGCTTAT
AGTATTTCAGTTATCTAAATATGTGTTTACTTTTCAGATCCTAAAAATAGTATAAAATTG
AAAGCATAGTTTTATATTAAAACGAAGAATGGC
