Cis-regulatory Region
Name
Cirobu.REG.KH2013:KH.C3.2806725-2807227
Short name
Ci-ephrinAd(-447/+56)
Region ID
REG00001016
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Fujiwara team (2015-08-28)
Annotator
Shigeki Fujiwara (2015-08-28)
Curator
Delphine Dauga (2018-04-17)
Modification of Cirobu.REG.KH2013:KH.C3.2806725-2807277 by deletion
CONS00000986: pCirobu.REG.KH2013:KH.C3.2806725-2807227>NLSLacZ
2,806,7252,807,227
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,806,725 / 2,807,227] on scaffold KhC3
The regulatory region contains 447-bp 5' flanking region, 5' UTR and 5-bp coding region. The DNA fragment was fused in frame with the translated region of lacZ.
Show sequence
Length: 503
AGCAATGTTTGACTTTCGTCGCTGCAATTGCAATATTGCACACGGACACAATACCGTTAT
CACCAATACTCTGCAAATCGTGGGCGCCAAGCTAATAAGCAGATAAGGGACGAGTGCGAG
CATAAATATTATGATAAGCTGGACTCTCGATTGGTCAGACGAGAAATAGCGAACAGCGAC
CGAAAAAAAGAGAAGAAGTCCGTAATTTGTATGGCTTTATAGCGGTCGACTCTCTACCGC
AAATCAGTGTATCTCGGTTCGCAGAGTAAGCAGCTTACAGTTTCGTGAGACCGAATTCAA
CGCAGTTCGATTAAATAAGTTGATAGCGTCTAATCGTTTGTATTTTATAATACCACAAGC
TCAGTAAGAATAAATGTCAACCAGTTTGATTTTTAGAAGTAAAGGCTTATAGTATTTCAG
TTATCTAAATATGTGTTTACTTTTCAGATCCTAAAAATAGTATAAAATTGAAAGCATAGT
TTTATATTAAAACGAAGAATGGC
