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CIS-REGULATION

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  1. Transcript 'KH2012:KH.C9.29.v1.B...'
  2. Molecular Tool 'pSP1.72-pFOG::Ci-FoxA-a'
  3. Transcript 'Moocul.CG.ELv1_2.S58...'
  4. Transcript 'KH2012:KH.L149.21.v2...'
  5. Region 'REG00001016'

Cis-regulatory Region

Name

Cirobu.REG.KH2013:KH.C3.2806725-2807227

Short name

Ci-ephrinAd(-447/+56)

Region ID

REG00001016

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Fujiwara team (2015-08-28)

Annotator

Shigeki Fujiwara (2015-08-28)

Curator

Delphine Dauga (2018-04-17)


Description

Overview of functional TF binding sites in this region

2,806,7252,807,227

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [2,806,725 / 2,807,227] on scaffold KhC3

The regulatory region contains 447-bp 5' flanking region, 5' UTR and 5-bp coding region. The DNA fragment was fused in frame with the translated region of lacZ.

Show sequence

Length: 503

AGCAATGTTTGACTTTCGTCGCTGCAATTGCAATATTGCACACGGACACAATACCGTTAT
CACCAATACTCTGCAAATCGTGGGCGCCAAGCTAATAAGCAGATAAGGGACGAGTGCGAG
CATAAATATTATGATAAGCTGGACTCTCGATTGGTCAGACGAGAAATAGCGAACAGCGAC
CGAAAAAAAGAGAAGAAGTCCGTAATTTGTATGGCTTTATAGCGGTCGACTCTCTACCGC
AAATCAGTGTATCTCGGTTCGCAGAGTAAGCAGCTTACAGTTTCGTGAGACCGAATTCAA
CGCAGTTCGATTAAATAAGTTGATAGCGTCTAATCGTTTGTATTTTATAATACCACAAGC
TCAGTAAGAATAAATGTCAACCAGTTTGATTTTTAGAAGTAAAGGCTTATAGTATTTCAG
TTATCTAAATATGTGTTTACTTTTCAGATCCTAAAAATAGTATAAAATTGAAAGCATAGT
TTTATATTAAAACGAAGAATGGC