- Region 'REG00001027' >
- Region 'REG00000198' >
- Transcript 'KH2012:KH.C1.44.v1.A...' >
- Region 'REG00001032' >
- Region 'REG00001015'
Cis-regulatory Region
Name
Cirobu.REG.KH2013:KH.C3.2806725-2807277
Short name
Ci-ephrinAd(-497/+56)
Region ID
REG00001015
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Fujiwara team (2015-08-28)
Annotator
Shigeki Fujiwara (2015-08-28)
Curator
Delphine Dauga (2018-04-17)
Modification of Cirobu.REG.KH2013:KH.C3.2806725-2807321 by deletion
CONS00000985: pCirobu.REG.KH2013:KH.C3.2806725-2807277>NLSLacZ
2,806,7252,807,277
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,806,725 / 2,807,277] on scaffold KhC3
The DNA fragment contains 497-bp 5' upstream region, 5' UTR and 5-bp coding region.
Show sequence
Length: 553
TGATGTATTGGGACTTAATGTATTGAAATCGCTCAGGTTTGGGTACAGTAAGCAATGTTT
GACTTTCGTCGCTGCAATTGCAATATTGCACACGGACACAATACCGTTATCACCAATACT
CTGCAAATCGTGGGCGCCAAGCTAATAAGCAGATAAGGGACGAGTGCGAGCATAAATATT
ATGATAAGCTGGACTCTCGATTGGTCAGACGAGAAATAGCGAACAGCGACCGAAAAAAAG
AGAAGAAGTCCGTAATTTGTATGGCTTTATAGCGGTCGACTCTCTACCGCAAATCAGTGT
ATCTCGGTTCGCAGAGTAAGCAGCTTACAGTTTCGTGAGACCGAATTCAACGCAGTTCGA
TTAAATAAGTTGATAGCGTCTAATCGTTTGTATTTTATAATACCACAAGCTCAGTAAGAA
TAAATGTCAACCAGTTTGATTTTTAGAAGTAAAGGCTTATAGTATTTCAGTTATCTAAAT
ATGTGTTTACTTTTCAGATCCTAAAAATAGTATAAAATTGAAAGCATAGTTTTATATTAA
AACGAAGAATGGC
