- Region 'REG00001016' >
- Region 'REG00001029' >
- Region 'REG00001014'
Cis-regulatory Region
Name
Cirobu.REG.KH2013:KH.C3.2806725-2807321
Short name
Ci-ephrinAd(-545/+56)
Region ID
REG00001014
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Fujiwara team (2015-08-28)
Annotator
Shigeki Fujiwara (2015-08-28)
Curator
Delphine Dauga (2018-04-17)
Containing 545-bp 5' flanking region, 5' UTR and 5-bp translated region.
Modification of Cirobu.REG.KH2013:KH.C3.2806725-2808428 by deletion
CONS00000984: pCirobu.REG.KH2013:KH.C3.2806725-2807321>NLSLacZ
2,806,7252,807,325
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,806,725 / 2,807,325] on scaffold KhC3
Derived from genomic DNA isolated from a Ciona individual from Kyoto
Show sequence
Length: 601
AACCAATGCCAGACAAGTCCGTTTGTTTGAGCCCAAAGTCGTTGACATTGATGTATTGGG
ACTTAATGTATTGAAATCGCTCAGGTTTGGGTACAGTAAGCAATGTTTGACTTTCGTCGC
TGCAATTGCAATATTGCACACGGACACAATACCGTTATCACCAATACTCTGCAAATCGTG
GGCGCCAAGCTAATAAGCAGATAAGGGACGAGTGCGAGCATAAATATTATGATAAGCTGG
ACTCTCGATTGGTCAGACGAGAAATAGCGAACAGCGACCGAAAAAAAGAGAAGAAGTCCG
TAATTTGTATGGCTTTATAGCGGTCGACTCTCTACCGCAAATCAGTGTATCTCGGTTCGC
AGAGTAAGCAGCTTACAGTTTCGTGAGACCGAATTCAACGCAGTTCGATTAAATAAGTTG
ATAGCGTCTAATCGTTTGTATTTTATAATACCACAAGCTCAGTAAGAATAAATGTCAACC
AGTTTGATTTTTAGAAGTAAAGGCTTATAGTATTTCAGTTATCTAAATATGTGTTTACTT
TTCAGATCCTAAAAATAGTATAAAATTGAAAGCATAGTTTTATATTAAAACGAAGAATGG
C
