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CIS-REGULATION

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  1. Clone 'cieg023l14' > 
  2. Region 'REG00000204' > 
  3. Region 'REG00001030' > 
  4. Clone 'ciem814d21' > 
  5. Region 'REG00001013'

Cis-regulatory Region

Name

Cirobu.REG.KH2013:KH.C3.2806725-2808428

Short name

Ci-ephrinAd(-1648/+56)

Region ID

REG00001013

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Fujiwara team (2015-08-28)

Annotator

Shigeki Fujiwara (2015-08-28)

Curator

Delphine Dauga (2015-09-02)

View position in WashU

Description

A fragment of the genomic DNA was amplified from sperm of a Kyoto individual. The Cis-reg contains 1648-bp 5' flanking region, 5' UTR and 5-bp translated region.

Hierarchy of Regulatory Regions

Regulated gene(s)

KH2012:KH.C3.716 (EFNA1; EFNA4; EFNA5)

Construct(s) made to test this region

CONS00000983: pCirobu.REG.KH2013:KH.C3.2806725-2808422>NLSLacZ

Show in situ data
Overview of functional TF binding sites in this region

2,806,7252,808,428

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [2,806,725 / 2,808,428] on scaffold KhC3

Derived from genomic DNA isolated from a Ciona individual from Kyoto

Show sequence

Length: 1,704

CTGCAGTCGTGAGTTAATTGGTGATAAGGAGACAAGGTTCGAATCTGACTCGCGCATGCA
AAATATGTTACCTCGATAATATTGAACCGTTTTCCAATAATTAGATTCGGCAAAAAATTA
TGTTTTACGCTACAATTTACCAGTACGTGGCGCTATAAAGGAGAAAAAACTAGTTTCAAA
AGTTTCGTTTAATTATTGATTATTTAAAAATATGATCATAAGCGTGAAATCTTTATTAAA
ATAATACTCACGCCAAAGGATGAGTAATTGAATGTTTAAATATCCATAGCGGAAAACCGA
TCTATCTTGTGCTTTCGCATAATAATTGGCCAAGTTTCTGCCGAGCCGCAATACGCAACG
AAATTGAAGTCTTGGTCCTTGGAAGGTCGTCACCGAAAACAAAACAAACCGGGATATGAA
AAAGTACCATCATAGAAATATAAAGAGTTGCGTAAATCGACCATTGTTAACCCCGGGTAG
TTATACTGGATCAATACAAGCGGAACACAGAGGCCTCCTTTGTATCTCGCATCCGTTGTG
TACAATTCCCGTTTGAGATTTGCCCGTGATTTGGCGTTCGGGAAGTAACGAATCCAAAAC
GAATTGAAGGAAGGCTCAGTGAGAAAAGCGTCTAAGGGAGACCACTACTCGAATGAATTG
ATCCTTTGCTTAAAGTTTACTTCGCCGAATCCGTTCTTGTTTTAATTAAACTTTCACTTC
CAAATAAGTCCTCGACTTCGCTAACGACCAAGTGCACCTGGATTGTAGGCAAGGTATTAT
AACAGACGGCCCATTTAATATTTTGTGTTATGGTGACAGCTTGTCGTAGCATGTTTGGTG
GCTTAGTGTGAGTCAATTTGACCAAGAATTGAGTCAATGGCTGGACAAATACTGTCTCGT
TTTGCCGAGTGGAAATCTTCACGATTCGGCAAAATCGCTTCGGTAATAAATCATCTTGAT
AGGTTGCGAATTATATCGTAGCTCGAAGCTGCTTGTTTGCAGAAATAAGATTAATTTCTG
ACGTCAGGCGATCATGAACGCTACCACATTAGCAATAAGAAGTGTTCCTTATAAGGTGTA
ATTTATCATATTTAATACACTAGAACCAATGCCAGACAAGTCCGTTTGTTTGAGCCCAAA
GTCGTTGACATTGATGTATTGGGACTTAATGTATTGAAATCGCTCAGGTTTGGGTACAGT
AAGCAATGTTTGACTTTCGTCGCTGCAATTGCAATATTGCACACGGACACAATACCGTTA
TCACCAATACTCTGCAAATCGTGGGCGCCAAGCTAATAAGCAGATAAGGGACGAGTGCGA
GCATAAATATTATGATAAGCTGGACTCTCGATTGGTCAGACGAGAAATAGCGAACAGCGA
CCGAAAAAAAGAGAAGAAGTCCGTAATTTGTATGGCTTTATAGCGGTCGACTCTCTACCG
CAAATCAGTGTATCTCGGTTCGCAGAGTAAGCAGCTTACAGTTTCGTGAGACCGAATTCA
ACGCAGTTCGATTAAATAAGTTGATAGCGTCTAATCGTTTGTATTTTATAATACCACAAG
CTCAGTAAGAATAAATGTCAACCAGTTTGATTTTTAGAAGTAAAGGCTTATAGTATTTCA
GTTATCTAAATATGTGTTTACTTTTCAGATCCTAAAAATAGTATAAAATTGAAAGCATAG
TTTTATATTAAAACGAAGAATGGC

Reference(s)

Horikawa et al. (2013). Transcriptional regulation in the early ectodermal lineage of ascidian embryos. Dev. Growth Differ. 55(9):776-85

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