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CIS-REGULATION

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  1. Region 'REG00000911'

Cis-regulatory Region

Name

Ci-DllB -440/9

Short name

n/a

Region ID

REG00000911

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Steven Q. Irvine (2011-08-23)

Annotator

Delphine Dauga (2011-08-23)

Curator

Delphine Dauga (2011-08-23)

View position in WashU

Description


Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-DllB -926/9 delta -610/-440 by deletion

Regulated gene(s)

KH2012:KH.C7.243 (DLX1; DLX2; DLX5)

Construct(s) made to test this region

CONS00000876: PCi-DllB -440/9::LacZ

Show in situ data
Overview of functional TF binding sites in this region

00

Motif Name Binding Factor(s) Sequence Position in Region Comment
1 SOX n/a agacaatggt [-176 / -167]
2 ZnF_(nuclear receptor) n/a gagcgacccc [-134 / -125]
3 SOX n/a gaataat [-114 / -108]
4 ZnF_(C2H2) n/a cacctc [-92 / -87]
5 ZnF_(GATA) n/a gataa [-7 / -3]

Sequence

Aniseed Coordinates: [0 / 0] on scaffold KhC7

Sequence from JGI V1.0 found with the sequence in Figure S1.

Show sequence

Length: 448


TATGTTACAGCAGACTAATACGCCATACCATGAATTGAAACGGAATGCACGTTATAGGTT
AGTCGAATTTTACTTTAATATGTTGAGATGCAATAACCTTTCTCTATACCTGCGGGGTAC
TGTTTTCTACAGCTATTGCGAGTACTGTGTTTACAGCAAGTACTTGGGAGTACGAAATAA
TTGTACCTTCACCTGTCGGTGATCTGACTTTATGAGGTGACTGAATTAGTAAGTCTCATT
ATAAAGCTGGCACTCGTGGAGAAGAGACAATGGTTCTTTTAATCCGGGCTCACAAGGCTA
CAATACGAGCGACCCCTTCGAAAACCGAATAATACCCGAGGCCAAATTCACCTCCCCGAC
TTGGAGTTTTTGAGAGTCGGGCTTGTGTTGGCTGCAGCCTACCGAGAAATGCATTGTTTT
TTCGACGCGCTACGATAAGAAGTCATTG

Reference(s)

Irvine et al. (2011). Expression of the Distalless-B gene in Ciona is regulated by a pan-ectodermal enhancer module. Dev. Biol. 353(2):432-9

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