Aniseed - Cis-regulation

Region 'REG00000913' >
Region 'REG00000906'

Cis-regulatory Region

Name

Ci-DllB -200/9

Short name

n/a

Region ID

REG00000906

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Steven Q. Irvine (2011-08-22)

Annotator

Delphine Dauga (2011-08-22)

Curator

Delphine Dauga (2011-08-22)

View position in WashU

Description

Coordinates are based on KH transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-DllB -926/9 by deletion

Ci-DllB -5000/9 REG00000903 [ regulatory_region (extended_promoter) ]
- Ci-DllB -2400/9 REG00000904 [ regulatory_region (extended_promoter) ]
  - Ci-DllB -1500/9 REG00000905 [ regulatory_region (extended_promoter) ]
    - Ci-DllB -926/9 REG00000902 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C7.243 (DLX1; DLX2; DLX5)

Construct(s) made to test this region

CONS00000871: pCi-DllB -200/9::LacZ

Show in situ data

Overview of functional TF binding sites in this region

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [0 / 0] on scaffold KhC7

Sequence from JGI V1.0 found with the sequence in Figure S1.

Show sequence

Length: 209

TATGTTACAGCAGACTAATACGCCATACCATGAATTGAAACGGAATGCACGTTATAGGTT
AGTCGAATTTTACTTTAATATGTTGAGATGCAATAACCTTTCTCTATACCTGCGGGGTAC
TGTTTTCTACAGCTATTGCGAGTACTGTGTTTACAGCAAGTACTTGGGAGTACGAAATAA
TTGTACCTTCACCTGTCGGTGATCTGACT

Reference(s)

Irvine et al. (2011). Expression of the Distalless-B gene in Ciona is regulated by a pan-ectodermal enhancer module. Dev. Biol. 353(2):432-9