Aniseed - Cis-regulation

Region 'REG00000572' >
Region 'REG00000901'

Cis-regulatory Region

Name

Ci-TH -3454/25

Short name

n/a

Region ID

REG00000901

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Kusakabe team (2011-08-16)

Annotator

Delphine Dauga (2011-08-16)

Curator

Delphine Dauga (2011-08-16)

View position in WashU

Description

Conversion to aniseed format of DBTGR database entry from Kusakabe team.

Transcription start site is based on the start of the first exon of the JGI transcript model.

Hierarchy of Regulatory Regions

Modification of Ci-TH -3526/71 by deletion

Ci-TH -3526/71 REG00000868 [ regulatory_region (extended_promoter) ]
- Ci-TH -3454/25 REG00000901 [ regulatory_region (extended_promoter) ]

Regulated gene(s)

KH2012:KH.C2.252 (PAH; TH; TPH2)

Construct(s) made to test this region

CONS00000866: pCi-TH -3454/25::EGFP

Show in situ data

Overview of functional TF binding sites in this region

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [0 / 0] on scaffold

Sequence from JGI V1.0

Show sequence

Length: 3,480

CTACGGTAGCTTGACTTTTGTTATTATAATCATATAATTTGTCGTTTGAATACATATGAC
TTATTACATATGACGTGTCAAACAAATGGTTGTCTAAAAATAGAAAAATGAAACGGAGGT
ACATAAGCGGTTACTCAGAAGCGTGAACGAGGTGTACAAAATCGAACATACGTTTTATAA
TGACTGTCGTTGCCCAACCTCGCGTGCATAAATAAGCTATATACGTGACTACTCAGCAGA
CATGAGGGACACCCGTTTTGTAACGACTGTCTCTGCCACCACACCGAAAAATGAATAAAT
GACATTCATTTATACACCATATGCACATGGTACAGCTCACTGCAGAGTAACGGGTAACGT
GTATTCATATCATACAGGGGTAATGTTTGTCTGTTATTGACTGTTGCTCGGTAAAAATTG
ACAGATGGTTTGATTTTTGAGTAGACAGTACTAGCCTCAAAGCTCGATGCTGCTACCATT
GTGGACTGGTGTGTTCTTGAAAAAGGTACCTATTGTCCCCACACAAAAAATACTTTTGAT
TTTACCGAGCAGAGTAATTTCCGAAGTTCTAAACTTGCTAAGTCATTGCACACCTTTTGG
ACCAACAAATCTTTGTTCCCAGCTTTTCTCATGTATCGTGGTAGTTATGGTAGGGTAGGA
TATAGATGGGACACCTTTGGCACATATTATCCAAATATCCTGATCGTGTTTTAAACAATT
ATCAACGGTCTTTATATGTCGTGAGGATATAGTTTTATAATTCTTTGAATGTTCTTTGTT
TACTACTAAATGAGACGAGAAAATAGAGGTAAAAGATGTCCCATCTTCTCCCACCCTACT
GTATATATAAAATATCATTTTTTGTACCCTGGCATAGTTTATTAAAACGTAAACGCTTGC
GTGCTGAATATGTAGGTTTATTTAGCTTCCGTTCGTTGCTGAAAATCGTGCCAGTTCATG
AATTAGACAGACACTGTGACAAAATAGGCATTTCACGAGTAATCTGCAATAACACGTATT
TAGTTGCCCAAATCGAAATTACAAAAAATAAAATTTGACTTTCTTTTGTCACGAAGGCAT
TCACCTACTTAAAAAAGCATGATGTATGTGTGATGTGCAAACGGATGAAAGAGAATAGCC
TACATAGTATAGTAGGGGTGGGAGGAGATAGGACACCTTTTCATTCTATTTTCTCGTTCC
ATTTAGTAGTAAACAAAAACCATTTAAAGAAATATAAAATCATAGATTCACGACTTCCAG
AATAGACCGTTGTAAATTATTTAAAATACGATCAGAATATTTGGATATTGTGTACTAAAG
GTACTATCTTTCCCCACCTTATACTATATCGTGTTGTGTAGGGATATACTTACCATTACA
ATCGTCAACCAATGTAAGTTATCTTTAAAACGTTGTTAAGAGTTATATATAGGGGGTTTA
GGACTATATATTATAATATGCTAACTGAATTCATTCATATTTTTTTATCAATTTCGTTCT
CGTTTTTTTATTGGAATTTCGTTATCACCCTTATATACTCACAAAATTTCTAATTCTTAG
AACGGCTCTAAAAAAGCGTTGTTAATTTAAAAAAACACGATTAGAAAATGTGGGATGTTA
TGTGCTTACGGTTCATCCGTCTTACCCCACAGTGCTGTGTATTTTCGTAAAAGTTTTGCC
GTTGATGCCTGTAGGCCTACTTTATAAGCGACACGGAGCAGACAAACTTGTCAACCATGG
AATTTAATTTTCATTCGCGTGGCAGGGCAACGGAAGACATAACTCGTGTGTTTTGTTTTC
TTGAGTTTGCGTCCGCTTACGATATATATTTTACGTAATTAGCTTTGTGGGTTATGATGA
CTTTTCAATTCTTTTTAATATAGCTGAGAATTTGGCCAACCACAAAATGCCACTGAGTTG
AAACAAATGTTGTTAGCTGTCTTGCTCAAGCACACTTGCTTAAACAATGGCAGCAAAGCC
ACGAGCCCTTTCCTTAGTCCAGACGTAAACGTCTAGTAGCTATTCACTATGGAATAGTCA
TAACATTTATACAATGGTTAATACACTACGTTGAAATGTAATTGAAAGAATCCAACATAT
TTTTCCCTTGCTTGGCAAGCCAACGACAGTCATTATAACACAGCCAATCTGTTGTATACA
CCCCATGCTGTCCGCTTACGAGTTACCACGTGTGTAACGTTGTAAATGATTATATTTTAT
CGAGTTTTTAGTTTGGATGGTATAATTTGGACAATCCATAAGGTGCCACTAGGTCTAAGC
AATTGACGCTAAGTGTCTTGCCCAGGGAGACACAGCACGGCAAAAAAACTTTGCAACACA
GAACTTCATGTTCGTGGTAAATGTTTTGCCCAAAATATGTTATAGGTATCTTGCAAAAAG
TATAAGTGTCTTGCCCAAAGGGCACACACGCCTGGTTCTAGGTTCTAGGGTCTAGGGTCT
AGGGCCTAGGCTATATCCCCCCAGGCGTTTTCCAACCGGCGATATCCCTCCCGGCTATTT
TCCCGCCGGCTACTTCCCCGCCTTGACTATCCCCCCCCCGGCTACTTAAACAGTCATAGA
ATTTATTCAGTCATAGCGTTTATATATTTATGGATACCCTATAACTAAACGTTCAAAATG
TAATTCCCTTCGAACAGAGAGACCACTTTGACAGTCGTAAAGTCTTGGAATTTTGATTTA
TTCGATACAAATGAAGTTTAAATAACAATGGCGTCGATATTTATTACAAAACAATCGACC
TGAAAACGTAACAATGGTGAATAATAGCGTTGTATTATTACGTCATCGAGGCTAAAAAAC
AGCTGCATTTGATCATATTAGGTTGTTTGTTACGTCATACTATATACCGGTTCAATAAAT
CGTATTCTGGACCCGTATATATATATATATATGAGGTATATATACGAGTTCCGCACCATT
TGTTTGGTGTGCATAGCACATAAGGACGCCAAAAGTGTATTTATTTTCGCTGGCTACAAT
GTTCAAAGTGTTATGTATAAATTTGGCGAAGTTTATTACGCCATTCAGACTCTCGGTGTT
TCGAACTCGTTTTTAGATGTTTTGTTTACCATATTTAAAACAACTAAGAAATGGTAGAGG
CAAAAGTCGCTGAACCCCTGTTATCAGTTTTGCACTTCCGTTTATTCATAGAATGTTTTA
GGATGTTATAAGAATTTCCGATCTCCGCTCGTGGTTCAAAATAAAGTTATTACAAGCAAG
GTTCAAAATAAGGTTATTACAGTTCAACTCAACTGATTGATGCAATGTCGGTTTGTTTGT
ATGACTGCTACAGTTGAGTAATTTCCGGAAACGCTGTTATTATGACAGAATAAACTACGC
AAAAAATGCTATTGCGTAACTGGCGTATTGCTTACGTCGCGAAATAACAATAAATAGGCA
GCTGATTTAAGTGAATCTACGTCATAGATACCCAGCTAAGTCTAAGCACTGAAAAAACGT

Reference(s)

Sierro et al. (2006). DBTGR: a database of tunicate promoters and their regulatory elements. Nucleic Acids Res. 34(Database issue):D552-5