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CIS-REGULATION

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  1. Region 'REG00000878'

Cis-regulatory Region

Name

Ci-Pitx -3815/55

Short name

n/a

Region ID

REG00000878

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Lionel Christiaen (2011-08-09)

Annotator

Marion Gueroult-Bellone (2011-08-09)

Curator

Delphine Dauga (2011-08-09)

View position in WashU

Description

Region from -3164 bp upstream the +1 to the first 55 bp of the exon 1 drives the entire Ci-Pitxa/b expression.

Region from -3164 bp to -2043 bp drives expression in stomodeal cells

Region from -2043 bp to -1776 bp drives expression in tail muscles

Region from -1776 bp to +55 pb drives ectopic expression in the mesenchyme.

Hierarchy of Regulatory Regions

Modification of Ci-Pitx -5500/-1328 by deletion

Regulated gene(s)

KH2012:KH.L153.79 (PITX1; PITX2; PITX3)

Construct(s) made to test this region

CONS00001570: test chris

CONS00000843: Ci-Pitx -3815/55

Show in situ data
Overview of functional TF binding sites in this region

00

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [0 / 0] on scaffold

This sequence was found using the sequence upstream the coding sequence of the exon1 of Pitx with a blast on the JGI site.

Show sequence

Length: 3,870

GTTTTTCAAAGGGACTCATTTGCTCTGTGTGTATACACGGAATGTGCTTACTCTTACAAT
AGTTTCGGGTCGCTCAAGCCCCAGTGTATACGTTGTTACTCGCATATTTTATAAGTTCTA
TCAGTTTCCGCAGAAAAATATTCAGTTAAAAATAGAAAACAAGGATTTTTTTGAAGTTTT
GAGTTTTTTATTCTGCGAGGTGTTAGGTTACATGTCCAGAGTTCGTGAGTCGTTAGGTGA
GCGAAATGGTGCCCGCGTAAAAGGGTGCCGGAAATTTGGAGCTATGTTTTACTATTGTTG
TTGTTTTAGTTAAAAAGTCGCGCTTTTAGATCTCTTTTAAAATGCATATGAACCAATTTC
TGGGCCGACTATTAAACACCAATCATTTATAAAAGGTAGATTTTACAGTTATAAACGTAT
TTTGTCATTTCTAACCAATACAATTTGAGTGTATTTTGGAATTGTGGTTTTGAATGATAA
TTTCTATCAGTAGATGCTTTTATGGTAGTTTTATATGCGGGTAATGCTTTACTTTACGGT
ATATGGTAACTTATTACAGAAGGGGGTGTATACCACTTACACGTTTGTTTGTGCTACATG
TAAACTCTGTATAAAAAATACGCGCAACGATCACATGTTTAAAGTCAACCACTTGGTTAT
GACGTAATAATGAGGTCATTCAAGTTTAACGAAATTATGACGTCACAATTCGATAAATTT
CATTCAAATGGTTATTGTACGTTTAATTTGATGATTGAAGGAATTGGGATTTTCTTAAAG
CTCTAGATTTAAGCGACTGTACGTCATCAAAGGGTCCGAAATTAATCGCGCTTTTATTAA
TTGTCCGCAACGATTGCAATTCAGCGAAGACGTCACGAAAAAGGTGAACTAGCGATCGCC
TCTCGCTCGGCTCGTGTTTCATATACGTCACACGATTCATGAGAACGTGTGACATCAGCG
GGGGAGAGACCGACGCATTGTTTATTTGAATGCAGTCTCTTGTAGTTACAGAATAGAACG
GACATACATTTTTATGTAAAGATTGTATAGACAGATGTATATACTAGAAATACCTACAAT
AGAGAACAAGTTAGACGACACATTTAAAGATATTTCGCTTATAGGTTTCACGATCGGGAA
CTGTTTCGTATAACACGGTTATACAGAATTTTGCGCATACAGAAACAATAAATACATAGA
TATGTATTCGTTTTAGTGACAGTGTCTATATTTGTAAGTATTGCTATAAAATCATTTATG
TATCGGGAACATTAAAAGAGAAAATACGTTTTATTTTCTGAGGGTATATGAAACGCACTG
GTATCTACGTAAAGTTATGACGAATAGTTCAATGTTTTATGTTGCGGTTTCTCAATTTCA
GTTTTGATAGAAATTATATTCTGCGTGTAATATATAAGACTTGGAAGGTTCTCTGGAAAT
TTCGCTCCCCAAAAGTTGCGGGAAATTTCATCAACAAGCGTGAAGATAAGATGGAATACA
GAACGGACAATTATTTCTCTTCTGCGGCCGCTGCGGCAGTTGCTGCCCACCCACCGTATC
ATCATTACTTTAACCAACAAACGAACAATTATAACTATAGCCCGTATCACAGTGGGGGCT
ATATTGGGGGCCTGTCCGGTGGGTCAATTTCAGGGGGTTCGCCATCTTCGTCCCCGCCGT
CGAATACCTCACCCCTATTTGGGGGTTCCCCGGGAACCCAAATTGCGCCATCAAGCTCCG
CTACGTCACCGTTTTCGGCTGGTTTGTCGAGGTACGCCGGAAAGTTTTCGGCCGGGTTTT
CGAAGCTCAATTCCGGCGGAAATGGACCTGGAGCCTCGGCCCTTTACCCTGGCAGCGGTT
TGGCTTCGCTTGTGGCTTCTGGAAGTAGTTACTCGCCTCAGAATGAGAAAATGGAACTGC
AGCCGAAATCATCGAGGGTCCCTTCACACGAACAAGTTTCAAAGTCATATTTTGAGCAGC
CTTACTCTAAATGCAAAGACTCATTCGGTAGCGATTGCCAAGACGCGCCGTCGCCAAGTA
AAAGCGTAGACTCTGTAGAATCTTCAGTTGAAGGTGAGAATCGACTTCGGGGTAAGAAAT
TATTTCCGCCGGGACTCGAGGTCCGATCGCCGGGCAAGCGCGCCCGATGTCGGAAAATTC
AAAATGGCGGCGCCCGCTTTTCGATAGGCGCGTTACAGTTTCGAGTCATAGTGACGAGTG
AAAAATTCAAACAAAAATCACGGTCGGAAAAAAACGAAGGTGCTTCGCAAATACCGATAC
GGTACCATCATAAATCTACATATCTAAATAAAGGCATACAATCGACAATTACATCAACAG
TTATTTACAAAGTATTGAAATAGTGTAGAGGCTCTTTGCTAATGCTATAAGCACGCAATG
TCCGGTTCTGGACACACTTATACTATTCAAGGGGTAGAATGGGGCGGTGTATTAAGTTTC
CAATCTGCCCATTGCGGATAGATTAATTTTAAATCTACATTATCGAAGATTTGCGTTTAA
ATCGGATAAAACGTGGGTATTTATTGAAATGTAATGAAGTATGGCGCGTTTCATTTGCGA
AAATCTGTTGAAGGCCCTAAAAAATTAAGATTTGTAGGGGTGTAATGTTTTTCAAAAATA
TCAAAGTACACACCCGTAAAGTAAAGAAAACGTTCGAAATACCCGTTACAGAAATGTTTA
AAAAGCTTTACCGTTCACGAAATGTGCGTTTAAATTCAAATACCGTTTATTGCAACTACA
CAAGTTGTTTTTATATGTTATCTATTTCTGTTAAATTCTCACCACTAATGTCAAAAACTG
CGAATCCATTAGACACACAGTATCGACCTAAGGACGAGCAGTGCAGGTTATAAAGGCCGC
GGAAAAGTCGCCTAAATACCCAACCTAATCCTGTCCCCCAAATTACCACGTTTATGTCCC
ATTGCATTTCCAGGGCTCGCCAAATCTGTGTGGATACAAAGGGCTAAGTACAGCTAAAAC
TTTAAAGCTTCAGAGCCGGTAAAACACGGCAATAGCAAGACAGGTTAAACCACCGGGATA
AAACCTCTGGCGTATACGCAGTCTAAAAAGTCTCTTTTATTAAGTTGACTCTAACAGATA
GAGCAGGACGATTTCACAGGTCGTTTCGGAAAGATAGTTTAGTAGAAATTTAGTATTTAA
TGCCTCGGTGAAAAAAGTCTAACCAGTTACAGACAGGACTGTAACCTTGAATGATATATC
TTGAGTTATCAACGGATAATTCGTATTAGATTACATAATAAGTCTTCCGTATTACAGATC
CGCAAGGTATTAGATATCAGAAGTATAATATACTAATCCGAATATTAAATTATTCTTAAC
TTTAAGCCTAAACCATAGAACTTATTTTACATCGAGTTTTAGCGAAAATTGTCGGGCGGT
TTTTCGTTTTACAAAATGTGAACTAGAATATTTTTACAATTCACTTTCGCGTCTGAATTC
TAGAGCTCCGATGGAATTTTAGATTGTTAATCCTATTTCGCGTCTACTATTTCATTATAT
ACCATACGCGTTGTCACCTGTGTGACGTCATAATACGGAATTGTTCATTTATCATAGAAA
AAACTGTCACGAATTTTTATTATCATTTAAAAACAAATATTATTTGACAGCCATTTACAG
TTTTTTTTCAGCTTTTTTGTATGTTGGGGAAATAACAAGTTAAAAAAATGAATAACACAT
TTAGAACGTTCATTCGCAGTATTTAGCAGTTTAAATGTTTTTATTCCATTTATTTAACAA
TTCTGTGTTTTTTTTAGAAGAATCAGTCGAAAAAATGGAGGAACTGAATCCAGCAAGCGA
AGCAGGCGGCAGTGAAGGCGAAACCGACAA

Reference(s)

Christiaen et al. (2005). A modular cis-regulatory system controls isoform-specific pitx expression in ascidian stomodaeum. Dev. Biol. 277(2):557-66

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