Cis-regulatory Region
Name
Ci-Pitx -5500/56
Short name
n/a
Region ID
REG00000874
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Lionel Christiaen (2011-08-09)
Annotator
Clara Degos (2011-08-09)
Curator
Delphine Dauga (2011-08-09)
Region from -3164 bp upstream the +1 to the first 55 bp of the exon 1 drives the entire Ci-Pitxa/b expression.
Region from -3164 bp to -2043 bp drives expression in stomodeal cells
Region from -2043 bp to -1776 bp drives expression in tail muscles
Region from -1776 bp to +55 pb drives ectopic expression in the mesenchyme.
Modification of Ci-Pitx -7865/140 by deletion
- Ci-Pitx -7865/140 REG00000681 [ regulatory_region (extended_promoter) ]
- Ci-Pitx -2735/-2540 REG00000682 [ regulatory_region (enhancer) ]
- Ci-Pitx -2735/-2540 First Otx site mutated REG00000685 [ regulatory_region (enhancer) ]
- Ci-Pitx -2735/-2540 Second Otx site mutated REG00000686 [ regulatory_region (enhancer) ]
- Ci-Pitx -2735/-2540 First Forkhead site mutated REG00000687 [ regulatory_region (enhancer) ]
- Ci-Pitx -2735/-2540 Second Forkhead site mutated REG00000688 [ regulatory_region (enhancer) ]
- Ci-Pitx -2735/-2540 First Smad site mutated REG00000689 [ regulatory_region (enhancer) ]
- Ci-Pitx -2735/-2540 Second, Third, Fourth Smad site mutated REG00000690 [ regulatory_region (enhancer) ]
- Ci-Pitx -2735/-2540 TALE-class sites mutated REG00000691 [ regulatory_region (enhancer) ]
- Ci-Pitx -2751/-2543 delta -2693/-2646 delta -2606/-2588 REG00000684 [ regulatory_region (complex_region) ]
- Ci-Pitx -2751/-2606 delta -2693/-2646 REG00000692 [ inactive_region ]
- Ci-Pitx -2751/-2696 REG00000693 [ inactive_region ]
- Ci-Pitx -2751/-2696 repeated x2 REG00000694 [ regulatory_region (complex_region) ]
- Ci-Pitx -2751/-2696 repeated x2 Second Pax site deleted REG00000696 [ inactive_region ]
- Ci-Pitx -2751/-2696 repeated x2 Second Otx site mutated REG00000697 [ inactive_region ]
- Ci-Pitx -2751/-2696 repeated x2 Second Forkhead site mutated REG00000698 [ inactive_region ]
- Ci-Pitx -2751/-2696 repeated x2 Second Smad site mutated REG00000699 [ inactive_region ]
- Ci-Pitx -2751/-2696 repeated x2/25bp spacer REG00000700 [ regulatory_region (complex_region) ]
- Ci-Pitx -2751/-2696 repeated x2/50bp spacer REG00000701 [ inactive_region ]
- Ci-Pitx -2751/-2696 repeated x2/75bp spacer REG00000702 [ inactive_region ]
- Ci-Pitx -2751/-2696 repeated x2/150bp spacer REG00000703 [ inactive_region ]
- Ci-Pitx -2751/-2696 repeated x5 REG00000695 [ regulatory_region (complex_region) ]
- Ci-Pitx -2751/-2606 delta -2693/-2646 REG00000692 [ inactive_region ]
- Ci-Pitx -5500/56 REG00000874 [ regulatory_region (extended_promoter) ]
- Ci-Pitx -5500/-1328 REG00000875 [ regulatory_region (complex_region) ]
- Ci-Pitx -2751/-2540 REG00000873 [ regulatory_region (enhancer) ]
- REG00000876 [ regulatory_region (complex_region) ]
- REG00000877 [ regulatory_region (complex_region) ]
- Ci-Pitx -3815/55 REG00000878 [ regulatory_region (extended_promoter) ]
- Ci-Pitx -3164/56 REG00000879 [ regulatory_region (extended_promoter) ]
- Ci-Pitx -3429/-2250 REG00000888 [ regulatory_region (complex_region) ]
- Ci-Pitx -5500/-1328 REG00000875 [ regulatory_region (complex_region) ]
- Ci-Pitx -2760/140 REG00000885 [ regulatory_region (extended_promoter) ]
- Ci-Pitx -3853/147 REG00000891 [ regulatory_region (extended_promoter) ]
- Ci-Pitx -3853/-553 REG00000892 [ regulatory_region (enhancer) ]
- Ci-Pitx -553/147 REG00000893 [ regulatory_region (extended_promoter) ]
- Cirobu.REG.KhL153:204692-208149|Pitx REG00001523 [ regulatory_region (enhancer) ]
- Ci-Pitx -2735/-2540 REG00000682 [ regulatory_region (enhancer) ]
00
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [0 / 0] on scaffold
This sequence was found using the sequence upstream the coding sequence of the exon1 of Pitx with a blast on the JGI site.
Show sequence
Length: 5,555
GTTTTGCATTTAAATAATAGACTGATGATGCAATGCAATGGTGAAATATATATCTTTGCA
CTTATTTGTTGGTTAGGTTAATTTTTTTCACTGCAATTGATTGGAATTTGTCATTTTTTG
GCAACAAGAAAAGTCTAAGATTCTAAGTATTAGACTGAATTGAACGAATATATATCGCAG
TAAATTGCCTATCTTTCCCCTTTTATCGATTCATTAATTGGGTAACAAACAAATAATATT
AACAGAATTATATAATTGAACAGTACCATAAAAGATCGTTAATTGTTAAAACATGAAAAT
ATGGAATAGCAATTGTTTTAGGTATCCATCTTACCCCACAGTACTATAACACAATTATAA
TGCATGAGTCTAAGACTTTCGACACAATGACACTCTGCTTATTTTTTTATAAGAATTTAT
AAATAAAACATGTACCACCTTGACCCATATCACTAAAGTTTATTGCAAACAACTAAAAAC
AATTACAATTAATTCCCAAACACAGAATTTCGAACTCAACTAAATTCTAGACATTTTTAT
AAAGACCGGTTTATGTTACGTCATATCCTGTTTAATGGACTAGAACAATGCCATTGTTTT
TAGACAATGGACCTTTCAGGCGAAAAATTGGAAAAATTTCAACACAAAACTGTTGGATTT
AAAATGTTCAGAAAATTTCGGGGTTCTCGTTTTTAAAAGTACCGTGTCAACTGTCAGTAA
ACATGCCCACTCCTTCGTTTACGCAAGACGGTTTTTTCTAAATCCTTAAAAATGCCGTGA
GCAGTCATGCAATACACTACGTCCAATTTTCCGGCCTAAAAAGGCTTTATAAGTCCCTAT
GATTATGAGGCGTCTAGTAAACTAAACAAACTCGGCAAAACGAAACACGGAACAGAGCGG
TATTTCAATTAAATCCGAACCCAAGAACCCCGGCCGCCCACAAAGAAAATCCGTAGGATT
AATTCCGCATGGTGGCGCCGAGTGGTCCGTGAAAATGGAAAATCATCACGTTTTTGAACG
CCGTTTCCCAAGTGAATCACGTTGTTCAGTTTACATGAAACTAAACGGCGGAAAAGTGCG
GAATACTGTTTACTGGGCCGGAAAATCTAATAAAAGTAGATATACCGCGCTAATGTGGGG
TAAAACGTGTTCTTTAGTCTGGCTTGTTAGTCATTTATGGTTCAAAGAAAACACGAGAGA
CTTATAGCATAGGTTGTACGGTATGTGCCTATACCTCATGCTCACTGTCGAGTTAAAAGA
ACATTGGTGACATCTAATGCACCAGGCATACATGATGTCATACCCCATATGCTTATACTG
TGGAGTTGAGTTATTGAGTTAATACGGGTGTATTCTTATACACCAGACACATATTGCGTA
TTCATACACCTCAGGCTCGATGTTAGTTTATAACGTAGTGTATTATGTACCTCATGCTCA
CTATTAAATTACAACGTAACTGCATTTAGATATTTTTAATACAACCGTAAGTGGGCGACA
AAGCGCTATACTTAAAACTTTCATTCGCGTTTTGAATTTTACAACATCCGCAAGTTGGGG
ACAAAGAGTTGAGCCATAATTTTGCATTTGCGGACAGCCATATTTCCCGCTAGAGGCGAT
AGGAAGCAAAACCTTGAATTCTTGCAGCGGTTCGCGCTTGAAGAGAGAAACTCTGTCGGC
TGAGAGTTTTTCAAAGGGACTCATTTGCTCTGTGTGTATACACGGAATGTGCTTACTCTT
ACAATAGTTTCGGGTCGCTCAAGCCCCAGTGTATACGTTGTTACTCGCATATTTTATAAG
TTCTATCAGTTTCCGCAGAAAAATATTCAGTTAAAAATAGAAAACAAGGATTTTTTTGAA
GTTTTGAGTTTTTTATTCTGCGAGGTGTTAGGTTACATGTCCAGAGTTCGTGAGTCGTTA
GGTGAGCGAAATGGTGCCCGCGTAAAAGGGTGCCGGAAATTTGGAGCTATGTTTTACTAT
TGTTGTTGTTTTAGTTAAAAAGTCGCGCTTTTAGATCTCTTTTAAAATGCATATGAACCA
ATTTCTGGGCCGACTATTAAACACCAATCATTTATAAAAGGTAGATTTTACAGTTATAAA
CGTATTTTGTCATTTCTAACCAATACAATTTGAGTGTATTTTGGAATTGTGGTTTTGAAT
GATAATTTCTATCAGTAGATGCTTTTATGGTAGTTTTATATGCGGGTAATGCTTTACTTT
ACGGTATATGGTAACTTATTACAGAAGGGGGTGTATACCACTTACACGTTTGTTTGTGCT
ACATGTAAACTCTGTATAAAAAATACGCGCAACGATCACATGTTTAAAGTCAACCACTTG
GTTATGACGTAATAATGAGGTCATTCAAGTTTAACGAAATTATGACGTCACAATTCGATA
AATTTCATTCAAATGGTTATTGTACGTTTAATTTGATGATTGAAGGAATTGGGATTTTCT
TAAAGCTCTAGATTTAAGCGACTGTACGTCATCAAAGGGTCCGAAATTAATCGCGCTTTT
ATTAATTGTCCGCAACGATTGCAATTCAGCGAAGACGTCACGAAAAAGGTGAACTAGCGA
TCGCCTCTCGCTCGGCTCGTGTTTCATATACGTCACACGATTCATGAGAACGTGTGACAT
CAGCGGGGGAGAGACCGACGCATTGTTTATTTGAATGCAGTCTCTTGTAGTTACAGAATA
GAACGGACATACATTTTTATGTAAAGATTGTATAGACAGATGTATATACTAGAAATACCT
ACAATAGAGAACAAGTTAGACGACACATTTAAAGATATTTCGCTTATAGGTTTCACGATC
GGGAACTGTTTCGTATAACACGGTTATACAGAATTTTGCGCATACAGAAACAATAAATAC
ATAGATATGTATTCGTTTTAGTGACAGTGTCTATATTTGTAAGTATTGCTATAAAATCAT
TTATGTATCGGGAACATTAAAAGAGAAAATACGTTTTATTTTCTGAGGGTATATGAAACG
CACTGGTATCTACGTAAAGTTATGACGAATAGTTCAATGTTTTATGTTGCGGTTTCTCAA
TTTCAGTTTTGATAGAAATTATATTCTGCGTGTAATATATAAGACTTGGAAGGTTCTCTG
GAAATTTCGCTCCCCAAAAGTTGCGGGAAATTTCATCAACAAGCGTGAAGATAAGATGGA
ATACAGAACGGACAATTATTTCTCTTCTGCGGCCGCTGCGGCAGTTGCTGCCCACCCACC
GTATCATCATTACTTTAACCAACAAACGAACAATTATAACTATAGCCCGTATCACAGTGG
GGGCTATATTGGGGGCCTGTCCGGTGGGTCAATTTCAGGGGGTTCGCCATCTTCGTCCCC
GCCGTCGAATACCTCACCCCTATTTGGGGGTTCCCCGGGAACCCAAATTGCGCCATCAAG
CTCCGCTACGTCACCGTTTTCGGCTGGTTTGTCGAGGTACGCCGGAAAGTTTTCGGCCGG
GTTTTCGAAGCTCAATTCCGGCGGAAATGGACCTGGAGCCTCGGCCCTTTACCCTGGCAG
CGGTTTGGCTTCGCTTGTGGCTTCTGGAAGTAGTTACTCGCCTCAGAATGAGAAAATGGA
ACTGCAGCCGAAATCATCGAGGGTCCCTTCACACGAACAAGTTTCAAAGTCATATTTTGA
GCAGCCTTACTCTAAATGCAAAGACTCATTCGGTAGCGATTGCCAAGACGCGCCGTCGCC
AAGTAAAAGCGTAGACTCTGTAGAATCTTCAGTTGAAGGTGAGAATCGACTTCGGGGTAA
GAAATTATTTCCGCCGGGACTCGAGGTCCGATCGCCGGGCAAGCGCGCCCGATGTCGGAA
AATTCAAAATGGCGGCGCCCGCTTTTCGATAGGCGCGTTACAGTTTCGAGTCATAGTGAC
GAGTGAAAAATTCAAACAAAAATCACGGTCGGAAAAAAACGAAGGTGCTTCGCAAATACC
GATACGGTACCATCATAAATCTACATATCTAAATAAAGGCATACAATCGACAATTACATC
AACAGTTATTTACAAAGTATTGAAATAGTGTAGAGGCTCTTTGCTAATGCTATAAGCACG
CAATGTCCGGTTCTGGACACACTTATACTATTCAAGGGGTAGAATGGGGCGGTGTATTAA
GTTTCCAATCTGCCCATTGCGGATAGATTAATTTTAAATCTACATTATCGAAGATTTGCG
TTTAAATCGGATAAAACGTGGGTATTTATTGAAATGTAATGAAGTATGGCGCGTTTCATT
TGCGAAAATCTGTTGAAGGCCCTAAAAAATTAAGATTTGTAGGGGTGTAATGTTTTTCAA
AAATATCAAAGTACACACCCGTAAAGTAAAGAAAACGTTCGAAATACCCGTTACAGAAAT
GTTTAAAAAGCTTTACCGTTCACGAAATGTGCGTTTAAATTCAAATACCGTTTATTGCAA
CTACACAAGTTGTTTTTATATGTTATCTATTTCTGTTAAATTCTCACCACTAATGTCAAA
AACTGCGAATCCATTAGACACACAGTATCGACCTAAGGACGAGCAGTGCAGGTTATAAAG
GCCGCGGAAAAGTCGCCTAAATACCCAACCTAATCCTGTCCCCCAAATTACCACGTTTAT
GTCCCATTGCATTTCCAGGGCTCGCCAAATCTGTGTGGATACAAAGGGCTAAGTACAGCT
AAAACTTTAAAGCTTCAGAGCCGGTAAAACACGGCAATAGCAAGACAGGTTAAACCACCG
GGATAAAACCTCTGGCGTATACGCAGTCTAAAAAGTCTCTTTTATTAAGTTGACTCTAAC
AGATAGAGCAGGACGATTTCACAGGTCGTTTCGGAAAGATAGTTTAGTAGAAATTTAGTA
TTTAATGCCTCGGTGAAAAAAGTCTAACCAGTTACAGACAGGACTGTAACCTTGAATGAT
ATATCTTGAGTTATCAACGGATAATTCGTATTAGATTACATAATAAGTCTTCCGTATTAC
AGATCCGCAAGGTATTAGATATCAGAAGTATAATATACTAATCCGAATATTAAATTATTC
TTAACTTTAAGCCTAAACCATAGAACTTATTTTACATCGAGTTTTAGCGAAAATTGTCGG
GCGGTTTTTCGTTTTACAAAATGTGAACTAGAATATTTTTACAATTCACTTTCGCGTCTG
AATTCTAGAGCTCCGATGGAATTTTAGATTGTTAATCCTATTTCGCGTCTACTATTTCAT
TATATACCATACGCGTTGTCACCTGTGTGACGTCATAATACGGAATTGTTCATTTATCAT
AGAAAAAACTGTCACGAATTTTTATTATCATTTAAAAACAAATATTATTTGACAGCCATT
TACAGTTTTTTTTCAGCTTTTTTGTATGTTGGGGAAATAACAAGTTAAAAAAATGAATAA
CACATTTAGAACGTTCATTCGCAGTATTTAGCAGTTTAAATGTTTTTATTCCATTTATTT
AACAATTCTGTGTTTTTTTTAGAAGAATCAGTCGAAAAAATGGAGGAACTGAATCCAGCA
AGCGAAGCAGGCGGCAGTGAAGGCGAAACCGACAA
