Aniseed - Cis-regulation

Cis-regulatory Region

Name

Ci-Tbx6b 62/238

Short name

n/a

Region ID

REG00000858

Status

Not Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(RNApol_II_core_promoter)

Author

Jamie E. Kugler (2010-07-08)

Annotator

Clara Degos (2010-07-13)

Curator

Clara Degos (2010-07-19)

View position in WashU

Description

The basal promoter of Ci-Tbx6b, localized in the gene Ci-Tbx6b from 62bp to 238bp.

Aniseed coordinates are based on the KH transcript.

Hierarchy of Regulatory Regions

Ci-Tbx6b 62/238 REG00000858 [ regulatory_region (RNApol_II_core_promoter) ]

Regulated gene(s)

KH2012:KH.C11.313 (FOXA1; FOXA2; FOXA3)

Construct(s) made to test this region

CONS00000829: pCi-Tbx6b +62/+238::LacZ

Show in situ data

Overview of functional TF binding sites in this region

26,81326,988

	Motif Name	Binding Factor(s)	Sequence	Position in Region	Comment

Sequence

Aniseed Coordinates: [26,813 / 26,988] on scaffold KhS654

Show sequence

Length: 176

GAATCATATTCGCCATAGTCTTGTCTGGTCCAATAAAACTTACAATTTCCTCTCTCTTTC
GATTTAACTCGTACTTTCAGTTTGGTGTATATCCAATGAGAACAGAAAGCGGAATGAGGT
ACTGTGAAACTAAACCCGTTTTATAGCGAGACTCGTTTTCGATGCCACTTTGATCT

Reference(s)

Kugler et al. (2010). Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis. J. Cell. Sci. 123(Pt 14):2453-63