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CIS-REGULATION

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  1. Region 'REG00000857'

Cis-regulatory Region

Name

bpFoxAa

Short name

n/a

Region ID

REG00000857

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(RNApol_II_core_promoter)

Author

Anna Di Gregorio (2010-07-08)

Annotator

Clara Degos (2010-07-13)

Curator

Clara Degos (2010-07-08)

View position in WashU

Description

Basal promoter of Ci-FoxAa used to drive expression in Kugler et al 2010 and described in Di Gregorio et al 2001.

Hierarchy of Regulatory Regions

Modification of FoxAa -1758/173

Regulated gene(s)
n/a
Construct(s) made to test this region
n/a
Overview of functional TF binding sites in this region

4,404,6914,404,868

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [4,404,691 / 4,404,868] on scaffold KhC11

Show sequence

Length: 178

TCTTTGACCAATAATTTCGCCGCCATTTTTTTCTTAAAATATCACGGCCAGTTTTTAACA
AGTTATTTTTCTAGCTTTCTATTTGAAATATTATACACAACTGCTGCTGTAATTTCTGAG
AAAGCTTTTGAAATCGGATTACTTTTGCAAGTACAAAAATGATGTTGTCGTCTCCACC

Reference(s)

Di Gregorio et al. (2001). The regulation of forkhead/HNF-3beta expression in the Ciona embryo. Dev. Biol. 229(1):31-43

Kugler et al. (2010). Temporal regulation of the muscle gene cascade by Macho1 and Tbx6 transcription factors in Ciona intestinalis. J. Cell. Sci. 123(Pt 14):2453-63

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