- Region 'REG00000852'
Cis-regulatory Region
Name
Ci-calumenin -2964/53
Short name
n/a
Region ID
REG00000852
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-08)
Annotator
Clara Degos (2010-07-08)
Curator
Delphine Dauga (2010-07-29)
Region upstream of Ci-calumenin from -2964bp to 53bp.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
2,003,5602,006,576
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,003,560 / 2,006,576] on scaffold KhC1
Sequence found thanks to the primers described in the paper.
Show sequence
Length: 3,017
TATCGAGTGCTCTCTCGGGGAAATCGGCGTTGTCGGTCTCGCACTGGGAAGCACAACAGA
TCCATATGCGTCATGTCGCCAGCAGAAATTTCTTGAAATCTCCAGATTGCTTTTCGACCT
GAAGGTAACTTTGGGCGTCTTGTTTTCGTCTTTGTTCATAGAGTCACAAATCGGAAAGTC
AGTTTGGGAGGACACGTCTTTAATTTTCCTAACATTTTTTAAGGCCTTTTCGCCGTCCAC
GTTTGCAGTTTTAAAAGCGGGATCAAGAATAGCGGAATTGCCTCCACCGCCATTACTCAC
AAATCCGGAAGAGAGAGACGTCCCTGCTCGATCTCGGACTTCAAATGCACCACGCTGCTG
CAGCTGTAACGGCAAGGTACGATAGGAGACTGCGTACTGTAATAAATCTATGAATGTCCA
TGTGTAAATGTGTCGATTGTATGAAACCATGAAATACCCTTTTTTTGTTTTTCCAGGAAC
ATTTACAAAAACGTATCATCTACACATTATAGTACGGTAAGGTAAGTTGGAGCATGTTTT
CACTCTCTTTTCCCGTCCCATTTGGTAGTAAACAAAATATTTTTTTGTAAAGAGATAAAT
AACTGTATACCCCTACGACTAAAACAGCGTTTTCAATTTTTAAAAAGATCTTCAGGAAAT
ATGGGGTTTATTTGTTACGATATCCCATCTTACCCCACAGTGCTATAAAACAAAGTTTCA
ATTCAATCATTGCAATACCTCAGAAATTCCGTCTTGTTCTGATACGTCATCTTCCCGGTT
TTCTTGAACCACTTCCTCACAAAATACGTCATCGTCCAGTTCAAACGCTTGGTCCTGGTC
TTGTATTTCAAAAAACCCGTGGTCACTCCCTTGATCAATGCTGACATTTTCTTGCAAAAC
AGCGGCCGCCATATAACTGTTTTAAGGTAACTAATTTGGTCCAGCAAGATTACCAAAGGT
TTTTATGCAGACGTATATATCTTTACATGTTTCAATGAATCAGTTACATACTGCGTATAG
TATAAGCTTGAATAAAAAAGATCTAAAGCTACATTTGCAAAAGGTTTTTTTAAATACTTA
TATTACGAAACATTTTTATATATACAGTTCCTAAATTTTAAATACATTACCATCTAACCA
GCGTCTAACTTGACTTAAAAGTTAACATTCAAAACCTTTGCGGATAACTGAAAGAAAAAA
CAGAACTGTTTCGAGGGCCTAAAACTCTCCGGGTAGACCGATTCAAGTCCAACTCAAACT
TAGAAGAGGATCACTTCAAATGTCCTTCGCTGCCACTTATGGGGCACGTGAGCTATTACA
GAACCACTGCTTAACTTCCAATAGCTGCGCCACTTCTCTCAAGCAGGCTTATGTGGCTAA
ATTCGGCTCAAAGCCAACTGTGTAGGTAAAGTCTTCTTTTGTTTTCAATACTGGTGGTAC
TTCCATAAAGCTTTGTTGGAATTGTCCAATTTACTGTGCTAAAGGCCGCTACTATGGCGG
GAGATTTTTTATATGGCCGATTGTTGTGAGTTCAAGCTGTTTGTTTAGAGTCCATAGAAA
TTAAAACCTATGTAGAAGTTAACTCACTTTTTATCCTCGCGTGGCCGGAAAACGATAGTC
GTCATAAGACGGATTATTATTTTTTTTGGGGGGAGGGGCATTTTTTATGTATGGCTGATA
ATTTGGAAAACCCATTAGTAACAACTGGGTTGGAACAATTGTCGTTAGGTGTCTTGCCCA
TGGACACATACGTTCGCAATGGTAGCAGCGACGAGCCTTGCCACGGCGCCGGAAAAGTCA
ATTACAATGCCAACATTACATTTTTGTTTTCTGTATATGTTTACTTTCCAGATTTTGATA
TCAATTGGTATTTCATGTTATCTAACACAACGCCGGTTTGACCTAACATACTGACCAAAT
ACTATATACTAAACCATAAAACTGTATCATATGTACGAGCTTGCGTTTTAATTATGCACT
TAAACCGTTTTAGAAATACAGTTGCGCAGTATTAGGTGGCCTGCATATAGTCTATAGAGA
CAGAGTTCTGGTTGTTTTACGGTGCTTGTGTAGAGGTCATATTAATCAACCGGTGCTTAA
CTTTCATTAGAAAGCGGTTTTTAGCAAAGTCTAGGCCTTTTATGTGCAGTTATAGTAGTA
ACTTACGCATTTGGACTACCCTCTGCGATAAGTTAAGCACCTGTTACAAAGTTATCCATA
ATAGCTACCTCCATTGTCGATTAGAAAGCTTTAGGACATATTTTAAAAAGTAGAACACAG
CAGTTTTAATAAAAGATTTTACTACAGTTTTAATTTTTTATTTTAAATCTAGGTAACATA
GTTTTATAAGTTCACCGCTAGAGGCGTATCACTAACCGTGGGAAACGCCGGTAATATTTG
ATGACGTGGCCTTCGAACTTCCGCGATACAAAGCGCAGTCATCATTTAAAGTTCGTTGAA
AAAGTTTCGGGCATATTCGGTTTCCTCGGAAAGTTTGGGCCACGACAGCATTAGGTGAAT
CTGCCTTTGTTTCTGCTTTTAACGGCATTCAGTCAGTGTAGTCGTGGCAGTGGCATCGTT
TGGTTGTGCACTTGTTTGGACCAGGTTTGGACGTTTAGACAGTTAAATTTTTTGCGATAA
CGTTTCTGTTGGCTATTGTTTTGCAATAGACCTTGTCCTGTTAATTGTTTTTAGAATACC
TAATTATATGGAACGTGTATTATGCTGCGTGCATAAGTAAAATTACAAACCGGTATAATC
TATACCAGACGTTCCGGATCATTACGTATTTCACACTTTTTAAGGCTAAACATATTTCTA
GCATGAAATGTTGGCTTGCTGTAGCAGCGGGCTATTACGGGTTAACAGTTAACACTGATA
TAAAATTTATCTGTTAGTATGTTTTAAAGTTTACGTTTGTGTGTTATGCTGTTTGGCATG
TTTATCTTGTATTTTGATTTATAGGTAGTGTGTAAAGGTGGTTGGGTTAGTGATATAAAA
AGGTAGTATGTGGAGAA
