- Region 'REG00000850'
Cis-regulatory Region
Name
Ci-talin -908/107
Short name
n/a
Region ID
REG00000850
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-16)
Region upstream of Ci-talin from -908bp to +107bp, can t drive notochord expression.
The corresponding construct is named p(-1.0 k)talin/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-talin -1411/107 by deletion
2,104,0432,105,057
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,104,043 / 2,105,057] on scaffold KhC3
Sequence found thanks to the primers used in the paper.
Show sequence
Length: 1,015
GATGCACCATCTTGCTTGTTGTTTGCCTTCTCTCAGCGATTACAAAAAACTCGAACAAAT
CAGATTTTAATCAAATTGTGGTCTGCCGCATTTGGTTTAAATGTTATCTACGTGACAAAA
GCAAATGTGTTAATAATGAATACCAAACAGAAGGAAACTGTTCTCTTTAAGAAATGACAT
TTAATCGTGCTCTGTCCAACAACTACTTCGAAATATATAGGTGCCACTGCCCCGTGTCAA
AACAAATGGCGTTTTACTGAGATTTTCGAGTTTAAATCAACTACTTCGGTTGAGAATATG
CTATTTTATCTGCACGAAAAGAAAATATTTCTAACACCTGTAATGAATACTGACGAGCAC
TTGTAACTCAGTCAGGCATTATTTCGGTTGAGCAGGAGAAAATTTAAGATAGTTAACCTC
GTCTCGATCATAGCGAGTCTAAACATTCCAAGTTGAAGTGCGTGGTGAAAATAAAACACT
GGTGTCGCTTTGAAATGCAAGTTAAAACCGCGTTTTTAGTACATAAAAAATCTAATAATT
TAATTACATTGACGCAAATATATATAGTAGAATGGGGGTAGATGGGACACTTTTTCGTTC
TTTTTTTTGTCTCATTTGATAATAAACAAAGACCTTCAAAGAATTATAAAATCGTGTTCT
TACGACTTACATAGACCGCTGTTAATTGTTTAAAACATCACCAGGATATTTGGATATTAT
GCTATAGAGGTGTCCCATTTTTCGGGGTGAGATGGAATACTGTTAGCACATAAATCCCAT
ATTTCTGATCGTGATAGAGTCAGGGGAATACGGTTGTATATTTCTGTGAACATTCTTTGT
TTACTAGAAAACTGGGCCAAGGAAAAGGTTGAAAACACGTCCCTCGTCCTACCTTACCCA
CATCCTAATATATACAACAGAAGCGATCGTTGATAGCAAGGCCTTTTTTCCTCAACTATG
ATTTATACACTCTGTCCTAACATGACGGAAGGAAATACATATATAGTTCGAAATA
