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CIS-REGULATION

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  1. Region 'REG00000818' > 
  2. Region 'REG00000848'

Cis-regulatory Region

Name

Ci-talin -1967/107

Short name

n/a

Region ID

REG00000848

Status

Curated

Origin

natural region from C. robusta formely Ciona int. type A

Type of Activity

regulatory_region
(extended_promoter)

Author

Hiroki Takahashi (2010-07-07)

Annotator

Clara Degos (2010-07-07)

Curator

Delphine Dauga (2010-07-16)

View position in WashU

Description

Region upstream of Ci-talin from -1967bp to +107bp, driving notochord expression.

The corresponding construct is named p(-2.0 k)talin/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.

Hierarchy of Regulatory Regions

Modification of Ci-talin -2163/107 by deletion

Regulated gene(s)

KH2012:KH.C3.14 (HIP1; TLN1; TLN2)

Construct(s) made to test this region

CONS00000811: pCi-talin -1967/107::LacZ

Show in situ data
Overview of functional TF binding sites in this region

2,102,9842,105,057

Motif Name Binding Factor(s) Sequence Position in Region Comment

Sequence

Aniseed Coordinates: [2,102,984 / 2,105,057] on scaffold KhC3

Show sequence

Length: 2,074

GATGCACCATCTTGCTTGTTGTTTGCCTTCTCTCAGCGATTACAAAAAACTCGAACAAAT
CAGATTTTAATCAAATTGTGGTCTGCCGCATTTGGTTTAAATGTTATCTACGTGACAAAA
GCAAATGTGTTAATAATGAATACCAAACAGAAGGAAACTGTTCTCTTTAAGAAATGACAT
TTAATCGTGCTCTGTCCAACAACTACTTCGAAATATATAGGTGCCACTGCCCCGTGTCAA
AACAAATGGCGTTTTACTGAGATTTTCGAGTTTAAATCAACTACTTCGGTTGAGAATATG
CTATTTTATCTGCACGAAAAGAAAATATTTCTAACACCTGTAATGAATACTGACGAGCAC
TTGTAACTCAGTCAGGCATTATTTCGGTTGAGCAGGAGAAAATTTAAGATAGTTAACCTC
GTCTCGATCATAGCGAGTCTAAACATTCCAAGTTGAAGTGCGTGGTGAAAATAAAACACT
GGTGTCGCTTTGAAATGCAAGTTAAAACCGCGTTTTTAGTACATAAAAAATCTAATAATT
TAATTACATTGACGCAAATATATATAGTAGAATGGGGGTAGATGGGACACTTTTTCGTTC
TTTTTTTTGTCTCATTTGATAATAAACAAAGACCTTCAAAGAATTATAAAATCGTGTTCT
TACGACTTACATAGACCGCTGTTAATTGTTTAAAACATCACCAGGATATTTGGATATTAT
GCTATAGAGGTGTCCCATTTTTCGGGGTGAGATGGAATACTGTTAGCACATAAATCCCAT
ATTTCTGATCGTGATAGAGTCAGGGGAATACGGTTGTATATTTCTGTGAACATTCTTTGT
TTACTAGAAAACTGGGCCAAGGAAAAGGTTGAAAACACGTCCCTCGTCCTACCTTACCCA
CATCCTAATATATACAACAGAAGCGATCGTTGATAGCAAGGCCTTTTTTCCTCAACTATG
ATTTATACACTCTGTCCTAACATGACGGAAGGAAATACATATATAGTTCGAAATAAAATA
TCTACAACGCGACAACGAAATGTGCACGCACGAAAACCTCATTACCCGTGGGACGATCTA
TATCAAATCCCAAAACCTTTTGGCAATTCTGTTAAAAGATAATAGATAATTGAGCCAGCG
TTAATTGCGGGCAATTCGTATGCTTGTCCTACCGTCATGTACGTTCATTTTAATTTGTAA
ACACAGTAGTAGATATCAATAACATCAACAGAATCGTATGACTCGTTTGTAAACAAGGGA
GCTTTGAATAATGAAACGATTTCCGTTTGTATTACACAGCATCGTAGCAGCTACACAAAA
AGTACGGGTACAATACAGCTTACTAACTTTTGCATGGCTGCTGTTGTTGACATAACCTAC
TAATACTGTCTTTGATGTTTGCCCTCACACTCCCCGGACTATCCCGAACAAACAATGTAG
TGGCCTCGGTTTCTATCTCATAGTAATTTACAACTGTGGTCAGACGTAACATTTTAAGTA
AAAATCATCGTTAGGAAACGCTAACATTCATTTTCCCTCTTTTCTTTCTTTGACATCGGA
TGCCGTTTTAGGTAGAAATTAAAACTGGATGACGTTGTGACTCATCAATGAACTACAGAA
ATAGCAAGAGCAACCAAGCTAGAGCTAGAATATCCGTCCTTCACATCGCATGTGAGTCAC
TCAAATGAATAAACTTCAGAAGCCAAATATAAGAAAATCTTAACTGTGCTTAGGATTTTT
TATGTTCCATTCTTGGTGGTTGTGAACATGTAACAAAAGGAAATTCTAACTTACGGTTCT
TTTTTATTCTGTTCCCGTGACTGTTCCGAAAACATTTATATAACTCACTCTCTGAGAATT
AGCATAGCTCGAAACACCTTGGGTGCTTTAGGAAGGAAACAAATCCAGTCAACGTACAGA
CCTATCCTGAACTGATAGAAACACGCTGTATCCGGCTTGAGTCTTTCAATTTATAAAAGC
AACTTATACAGTTAGGTACGCTACACAATGACGAAAGTCTATTTCCGCTTGCCCACTATA
CGTCATTCCTGATTGAGTGCACTGCTTACTGCAG

Reference(s)

Takahashi et al. (2010). Regulation of notochord-specific expression of Ci-Bra downstream genes in Ciona intestinalis embryos. Zool. Sci. 27(2):110-8

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