- Region 'REG00000845'
Cis-regulatory Region
Name
Ci-talin -2911/107
Short name
n/a
Region ID
REG00000845
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-16)
Region upstream of Ci-talin from -2911bp to +107bp, driving notochord expression.
The corresponding construct is named p(-3.0 k)talin/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
2,102,0402,105,057
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [2,102,040 / 2,105,057] on scaffold KhC3
Sequence found thanks to the primers used in the paper.
Show sequence
Length: 3,018
GATGCACCATCTTGCTTGTTGTTTGCCTTCTCTCAGCGATTACAAAAAACTCGAACAAAT
CAGATTTTAATCAAATTGTGGTCTGCCGCATTTGGTTTAAATGTTATCTACGTGACAAAA
GCAAATGTGTTAATAATGAATACCAAACAGAAGGAAACTGTTCTCTTTAAGAAATGACAT
TTAATCGTGCTCTGTCCAACAACTACTTCGAAATATATAGGTGCCACTGCCCCGTGTCAA
AACAAATGGCGTTTTACTGAGATTTTCGAGTTTAAATCAACTACTTCGGTTGAGAATATG
CTATTTTATCTGCACGAAAAGAAAATATTTCTAACACCTGTAATGAATACTGACGAGCAC
TTGTAACTCAGTCAGGCATTATTTCGGTTGAGCAGGAGAAAATTTAAGATAGTTAACCTC
GTCTCGATCATAGCGAGTCTAAACATTCCAAGTTGAAGTGCGTGGTGAAAATAAAACACT
GGTGTCGCTTTGAAATGCAAGTTAAAACCGCGTTTTTAGTACATAAAAAATCTAATAATT
TAATTACATTGACGCAAATATATATAGTAGAATGGGGGTAGATGGGACACTTTTTCGTTC
TTTTTTTTGTCTCATTTGATAATAAACAAAGACCTTCAAAGAATTATAAAATCGTGTTCT
TACGACTTACATAGACCGCTGTTAATTGTTTAAAACATCACCAGGATATTTGGATATTAT
GCTATAGAGGTGTCCCATTTTTCGGGGTGAGATGGAATACTGTTAGCACATAAATCCCAT
ATTTCTGATCGTGATAGAGTCAGGGGAATACGGTTGTATATTTCTGTGAACATTCTTTGT
TTACTAGAAAACTGGGCCAAGGAAAAGGTTGAAAACACGTCCCTCGTCCTACCTTACCCA
CATCCTAATATATACAACAGAAGCGATCGTTGATAGCAAGGCCTTTTTTCCTCAACTATG
ATTTATACACTCTGTCCTAACATGACGGAAGGAAATACATATATAGTTCGAAATAAAATA
TCTACAACGCGACAACGAAATGTGCACGCACGAAAACCTCATTACCCGTGGGACGATCTA
TATCAAATCCCAAAACCTTTTGGCAATTCTGTTAAAAGATAATAGATAATTGAGCCAGCG
TTAATTGCGGGCAATTCGTATGCTTGTCCTACCGTCATGTACGTTCATTTTAATTTGTAA
ACACAGTAGTAGATATCAATAACATCAACAGAATCGTATGACTCGTTTGTAAACAAGGGA
GCTTTGAATAATGAAACGATTTCCGTTTGTATTACACAGCATCGTAGCAGCTACACAAAA
AGTACGGGTACAATACAGCTTACTAACTTTTGCATGGCTGCTGTTGTTGACATAACCTAC
TAATACTGTCTTTGATGTTTGCCCTCACACTCCCCGGACTATCCCGAACAAACAATGTAG
TGGCCTCGGTTTCTATCTCATAGTAATTTACAACTGTGGTCAGACGTAACATTTTAAGTA
AAAATCATCGTTAGGAAACGCTAACATTCATTTTCCCTCTTTTCTTTCTTTGACATCGGA
TGCCGTTTTAGGTAGAAATTAAAACTGGATGACGTTGTGACTCATCAATGAACTACAGAA
ATAGCAAGAGCAACCAAGCTAGAGCTAGAATATCCGTCCTTCACATCGCATGTGAGTCAC
TCAAATGAATAAACTTCAGAAGCCAAATATAAGAAAATCTTAACTGTGCTTAGGATTTTT
TATGTTCCATTCTTGGTGGTTGTGAACATGTAACAAAAGGAAATTCTAACTTACGGTTCT
TTTTTATTCTGTTCCCGTGACTGTTCCGAAAACATTTATATAACTCACTCTCTGAGAATT
AGCATAGCTCGAAACACCTTGGGTGCTTTAGGAAGGAAACAAATCCAGTCAACGTACAGA
CCTATCCTGAACTGATAGAAACACGCTGTATCCGGCTTGAGTCTTTCAATTTATAAAAGC
AACTTATACAGTTAGGTACGCTACACAATGACGAAAGTCTATTTCCGCTTGCCCACTATA
CGTCATTCCTGATTGAGTGCACTGCTTACTGCAGTGCAACCTCGGCCTGTGAAAACTTAT
TTCACACTCACGAACGAGATTTATTTGGTAACAGTTTCAAACTCTTGGCTGCACACATCC
ACATGGGTGTTAACTCTTGAACTAACACGTTCTGTTTGGTTCTTAAATGGGACACGGCTA
GATGCCAACCCTGTTTCTTTTATAGAAATAAATAAACTTGACCCGCTAGCGCTGACACGA
CGTTAACACTTGCTGTTTACATCGCTCTACAAAATAGTCTCTTTGAATAACTGTATTTGG
ACATATCGAAAATCAAAAACTATTCGTTAGCGATTAAACCATAGATTTTATAAACGGTGT
GCGATTACTTATTTACAAAACGGTACTAGCCTATACCAAGGGCAAATCGACGCGAAAATG
CTTTGGAGGAACCAAAGACAAATTTTTCTTTTCGTGAACTGCAAGACAGTGCTGAGAAGA
GGCGCTTACCTGTGGTCGCACATTAATCGCTCGAGTGGCGAGTAGGAATGCGGAGAACTT
AACGCAAAAGCACCGAATGTTATGTGTCAATACCTGCGCCCTGGCTGAGCGTACGTGCTT
CTCTTTGCAACCGCGGATTCTTGCCTTAAAACTGTCCGATAGAGATGTTTCTTTTACTCG
TAATTTTTAACATGAAGTTTAGGGAAACTTATAATTCAAAGAACAAGCTATATTTAGAAT
TTTTAAGGTTTTAAAACAAATAACAAGTACAAAAACAAACCAGAAACTACAGTTTAAAAC
AACCACAGGATTTACTTCAGTAGCTTTAGTAGAATTGTATAATATTTTAAAATTGCTTAA
CTCTAACAGGTTTTAATAAAGGCAATACGTCTACAAAATTTGAAAAATGCCCTGTTTACT
AGCTATTGGCCCACACACATTCCTTTACATGTCTCAGAGGCAACGTCATAATCTTGAGCA
ATACCTCACTGTGGGATG
