- Region 'REG00000842'
Cis-regulatory Region
Name
Ci-beta4GalT -1451/63
Short name
n/a
Region ID
REG00000842
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-22)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci- beta4GalT from -1451bp to +63bp, driving notochord expression.
The corresponding construct is named p(-1.5 k) beta4GalT/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-beta4GalT -2728/63 by deletion
3,442,5433,444,056
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [3,442,543 / 3,444,056] on scaffold KhC11
Sequence found thanks to the primers used in the paper.
Show sequence
Length: 1,514
GTTAGCACAAACGATGTTTCGTAGTCGTGGTGCTACATTTACAGTTATTCCGTTAATTTT
CTTTGTTTACTACCAAATGGGACGGGAAAGGAGAATAAAAACAGCATGTCCTATCTTACC
CCACTCTATTACAGTATTGGTTAGACTAGAAGTTGTAAATAAAAAATAGATCATACCATT
ACAAATATAGCTAATAGCTATTCATAAAAGCAGATGTTGTCTTAAATACGTCCTTGTCGA
TAAGGAAACGAAACCGAAAGGTATGTGACGTCATTTCGTTTATATATCCGCTTTCCTCTG
AGCTATACCACGCTAACGAACAATGCTTTTCAAACATCGATATTAATTCAATACTAATAT
CAGTTGTTAATAGTTAACGTTTCACGATAAGGGTTTACAGAACAGTTTTTGTATACCGAA
CGGAAACATGTGTGTAACCGAATATATTCTGCGAACTATGGTTCAATTCTCTTCACAAAG
CGAGCCTACGCCCGATACGCACCGGTGATTTTGTGAATCAGTCTGCTCGTACTCGATTGA
TATGGCAACCTCTCCCGGTACAGCCCAGTTCGCAGTTACTGTAGTGAAGAGGCGGTAATG
CCAGACTAAAGTTCAGACCAGTGTTATAGCGTTGTTGGATTTACTGTAATGTTGTAACGC
TTGTTACACCTGTATGCTTGTGTTATAAAGAGTGCATAGATAGCTTTTGTTCCAAATCAA
ATAGTTGTACAGTATTGAAAAAGGTTTATGTAGACTTAAGTTAAGTCTTTTAACTAAAAT
ATTGTAACGCATTGATGACTGTAAGCATATCTCAGACCGTGTTAATGTTCAATGAGTCAT
AGCTCTTGTTTGACAAGCCATGTTTAACTTACATACGTGTCAATCAGGATAACTGTATGC
ATATTTTCTGTGTTGTTTGTTAAAATTGTTTGACTTATGCGTTTATCTAGTTTTGTTTTA
AGAGCTTCTCTGTCAATGCTAACAGCCAGTCAGTAACAGTGACTTGTTGCCTCGGGCCCA
ACTGTTAACAGTTAAACACACACTCTACTACGTGTGTAGAGAAGCCAGTCCAATGTTGCT
CTTACGTGTATATGCTGGTGTGGGATCAGGAAATGACCAACCTATTCTGTTATGACACCA
GACTAGTTTCTTGTTTTAATGTTATCACAGCTAGGGACAGCTGTTAGATATATTACCGTT
AGAGGAAGTAGTTCTGTGCCGTCACATGTGCTTAATAGGATAAACTAGTCTTATTTCAGG
GTAGTATTATTGAACTGATTGTAAACCTTATCTCGTGACGGGAATGACGTGACTGGTAGT
TTTGGTGTGTGCACTATTAGTTTGGCGTCAGTTTTTGCGAGGTGTTAAATAATGAAAGCG
GTATCGCCTGTTTCGTATAACTGTTTGTTAACCGGTTTAACTGTTTATTTTATTGATGCT
TTTATTCGTAGGTGCTGCTAGCTTAATATTTCAGGAGCGGTCTATATTTTGTATACGTGG
TTACATGTCACTCA
