- Region 'REG00000841'
Cis-regulatory Region
Name
Ci-beta4GalT -2728/63
Short name
n/a
Region ID
REG00000841
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci- beta4GalT from -2728bp to +63bp, driving notochord expression.
The corresponding construct is named p(-2.7 k) beta4GalT/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-beta4GalT -2957/63 by deletion
3,442,5433,445,333
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [3,442,543 / 3,445,333] on scaffold KhC11
Show sequence
Length: 2,791
CAATTGGATCGACAACATGGAATGCAGGTCACATCTTGCCCTACCCTAGTATGGGGAACT
TAATTTTGGCGTAAAGTTGTGTATACTGTAGCTACTATTGTATACCAGCGAAGTAGGGTG
TATAGGTCTGAGATATTTTTATTTTTTTAACGTAGTCTACATGCAAGATAATGCATTTAT
CCTAGAAAACTCGTTTTAACAATATAGGTTTGCTTAATATGGATCACACATATGTTGCAA
TTCCAGGAAGTCGGGGATTTTCCTGACAGCTTTACAATTTTTTTACTAACAATTTTACGT
TGTAAGAATGCCTATGCATTGTGTATATAGAGGACAGTAGGTTTTGAAACTGTTTACGAC
GCAAGTCTTACTATAAAGTCGGCTTCACACTTTTAAGAAATGATAAATGGACATGGCCAT
TTAAAGAATAGTGTGACCGTAGAACATTTGCAAGTTATAAAATATATTTTAAACTGTATT
TTTATAATAGTGGCTTTAATAGAGTTTAAATGAAAATCTGTGTTAAGTTATATACAGTAA
TTGTAGATTGGGTAGTTTTGTCATGACTCATGTTCCTACTAAATGTAGTTTAGTTATACA
GTCGATTATAAAATGGAAAAACAACTAGAAACAGTAGGTATCTAGGTATCAATATCAATT
CCCCGTCAGATTATGAAAGAGAAATAAAAGAAATATGATCGCTTGGTAATCATAAGTTTT
GGAAGTAATACTTGGCTAGGTCACAAGATTGAATCATATGCGTAAATATGTTATGACGTA
ATGTTTATATCAAAACATAACAACAATTAAGCTACTCCTAATATGCCTAGTTTAAGGGAG
TTACTTTTGTAAATATATAGTAGGGTGGAGGAAGCTGGGACACCTTTTCATTCTATTTAC
TGGTCACATTTAGTAGTAAACATAGAATATTTAACGAATTATAAATCAATAACTTTACGT
CTTCCATAGACCTTTGTTAATTGTTAAAAACAGGATTAGGACATTTAAATATTAGGTGAT
AAAGATGTCCCATCTTCCCCCAACCTACTATATACACAATTTGCGTGCAAAAAAACTTTA
AAAATTTTATGTAAAAACTCTGTTTGATAAACCGTGACCTAAAGTGCATTACTTAACTGT
TTTAAAAACTCGGTAATTCTTTTCTGCTAAAACGTGGTAAACAAACATTGGTTGACGAGA
AATAAATGCTTATTTTGTCGGTTTTAAAGAAAGACCGAAATACTAGATTGTAATGTATAA
GTACTGTGTGGTAAGATGTTAGCACAAACGATGTTTCGTAGTCGTGGTGCTACATTTACA
GTTATTCCGTTAATTTTCTTTGTTTACTACCAAATGGGACGGGAAAGGAGAATAAAAACA
GCATGTCCTATCTTACCCCACTCTATTACAGTATTGGTTAGACTAGAAGTTGTAAATAAA
AAATAGATCATACCATTACAAATATAGCTAATAGCTATTCATAAAAGCAGATGTTGTCTT
AAATACGTCCTTGTCGATAAGGAAACGAAACCGAAAGGTATGTGACGTCATTTCGTTTAT
ATATCCGCTTTCCTCTGAGCTATACCACGCTAACGAACAATGCTTTTCAAACATCGATAT
TAATTCAATACTAATATCAGTTGTTAATAGTTAACGTTTCACGATAAGGGTTTACAGAAC
AGTTTTTGTATACCGAACGGAAACATGTGTGTAACCGAATATATTCTGCGAACTATGGTT
CAATTCTCTTCACAAAGCGAGCCTACGCCCGATACGCACCGGTGATTTTGTGAATCAGTC
TGCTCGTACTCGATTGATATGGCAACCTCTCCCGGTACAGCCCAGTTCGCAGTTACTGTA
GTGAAGAGGCGGTAATGCCAGACTAAAGTTCAGACCAGTGTTATAGCGTTGTTGGATTTA
CTGTAATGTTGTAACGCTTGTTACACCTGTATGCTTGTGTTATAAAGAGTGCATAGATAG
CTTTTGTTCCAAATCAAATAGTTGTACAGTATTGAAAAAGGTTTATGTAGACTTAAGTTA
AGTCTTTTAACTAAAATATTGTAACGCATTGATGACTGTAAGCATATCTCAGACCGTGTT
AATGTTCAATGAGTCATAGCTCTTGTTTGACAAGCCATGTTTAACTTACATACGTGTCAA
TCAGGATAACTGTATGCATATTTTCTGTGTTGTTTGTTAAAATTGTTTGACTTATGCGTT
TATCTAGTTTTGTTTTAAGAGCTTCTCTGTCAATGCTAACAGCCAGTCAGTAACAGTGAC
TTGTTGCCTCGGGCCCAACTGTTAACAGTTAAACACACACTCTACTACGTGTGTAGAGAA
GCCAGTCCAATGTTGCTCTTACGTGTATATGCTGGTGTGGGATCAGGAAATGACCAACCT
ATTCTGTTATGACACCAGACTAGTTTCTTGTTTTAATGTTATCACAGCTAGGGACAGCTG
TTAGATATATTACCGTTAGAGGAAGTAGTTCTGTGCCGTCACATGTGCTTAATAGGATAA
ACTAGTCTTATTTCAGGGTAGTATTATTGAACTGATTGTAAACCTTATCTCGTGACGGGA
ATGACGTGACTGGTAGTTTTGGTGTGTGCACTATTAGTTTGGCGTCAGTTTTTGCGAGGT
GTTAAATAATGAAAGCGGTATCGCCTGTTTCGTATAACTGTTTGTTAACCGGTTTAACTG
TTTATTTTATTGATGCTTTTATTCGTAGGTGCTGCTAGCTTAATATTTCAGGAGCGGTCT
ATATTTTGTATACGTGGTTACATGTCACTCA
