- Region 'REG00000839'
Cis-regulatory Region
Name
Ci-tensin 5581/6022
Short name
n/a
Region ID
REG00000839
Status
Not Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-23)
Curator
Clara Degos (2010-07-23)
Region of Ci-tensin from +5581bp to +6022bp. This region drives mesenchyme and epidermis expression, but not notochord expression.
The corresponding construct is named p(-0.5)tensin/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-tensin 4620/6022 by deletion
4,280,3614,280,801
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,280,361 / 4,280,801] on scaffold KhC9
Show sequence
Length: 441
CTGCAGCGTCCATTACAAAGGCTGTATTTCTAGGCGTAAAAAGCCACATAGATCGTCCGC
GAATCCCCGCTACCGGTTAATGTAAAAAACGCCCAGATCTTGGCGTCAGAAGTCCGAACT
TTATATCGCATTTAGCTGCGAAACTACCAGCAATAGTGGATGACAGGAGACGACAGCTTT
AGTGCGATTATAAAAAGCAAATGATTTAAATATCAAATCGCGGCAGAGGGCATTCAAAAT
CATCGCCTTAATTTATACAGCGCCTAGAGTCCGAAAGATCAGAATTTTGTTATTAAAGTT
GTCATTACTTGGATGAGAGCCTAAATTACCACTTGTTGGTTTACAGGTCAGGTCGTTTGT
TGAAAAAGAGCTGTTCTACCATTTGTATTGTTAAAGATCAACGGAAATACGGAATATTTT
AACACAGAGCAATGAGAGAAG
