- Region 'REG00000837'
Cis-regulatory Region
Name
Ci-tensin 3974/6022
Short name
n/a
Region ID
REG00000837
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-26)
Region of Ci-tensin from +3974bp to +6022bp. This region drives notochord expression.
The corresponding construct is named p(-2.0k)tensin/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-tensin 3545/6022 by deletion
4,280,3614,282,408
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,280,361 / 4,282,408] on scaffold KhC9
Show sequence
Length: 2,048
GTCGACGACAATAGATATCTTATTAGCTGTCTATGAACAACCTAGAAATTTTATTTGTGG
TAATATGCATAGTGTAAGATACCGGTTCCGTAAACGCGTGCCATATACCCTAAAGTTAAT
TGCCAGTACTGTAATAAGGTTGCGCGCAAATGGGGTAAATGTGTATTGTAGGCTGACCAG
TAAATGGTATATGCATTGTGTACATAAGCATTCCACGGTTTAATTAGTAACGTTACTAAT
ATTTTTACAAACATGGCTTTTATAGTAAGCGTTACCATAGTATTTGACGGCAGATTTCGT
TATAAGCGCTATACCATAGTATTTGACGGCAGAATTAGTTTAGCATCGAGTCCTGCTATT
TTCGCTCTTGATTTAATCAGGTAAGCAGGAGCCAGGGACACAGAACAACAGATGTCGGAT
ACAGGATGTTTGTTAACCAAACCACAGGACGAACCGCACTCTAATCGCAAAGGATTGTTT
CGTCTATCTGCCCATTCAGGCTCGTACGAAAACGAACATTAAATGGTTGTATATTGATTG
TATTACTTTGCGCATTTAGCTTATTTGGAATACGCTTACGCTGCATTGGACCTGTGTTAT
AGGGTCGTTCGAGGTCGTACCCTGTGCTCCAATGGTTAGGCATGGAGCATGCGCACTAAT
CGTATTATGACGATATGGCGGTATTCCTTTCACGGTAATTGAATTGGAAAATGAATAACT
CGGTATGACCAATGCTTGTAAAGTTGCGATTATAGCGCGCAACGGTCAGCGATAGTCGAG
TAATGTTTGCCTAAGATTTTCACTTCGGTGTGTTTTCTAGTTTACTGGGAAATGCGAAGT
TACGAGGACAGCATTCGAGTGACTTTGTTTACTCTGGAAATCTGTTGTTTGCTTCGCAAC
TATTCAGCTTGCTCGACCGCTTGTTCAAGGCAGAGATTGGCTCGCTAATTAATGTTTACC
CGCCTGGGCGATGCCTGCCTTTCTCGGGCCGACGGATGGCGTATGAGTGCGAATCGGCGA
TTGAAGATCACCGGCCGTCATGTAGGAGTCCAGATCGCCCGCAGAAGTTCGGTCGCAGGT
TCGGCTGTAGGTCAGCGTCGCTGGCGGGTTTACGACCTAGTGTAAAAGCGGTGCATACGG
TCTCGTTGGCCGGACGACTGTAAAACCGCAGCAGTTTAATAAGTTACTACTATACTGGCG
TCGTATTGCAAGGTTTCCGTCTCTGCGGTTTCAAGGCGAAGAATAATGCGGGTTTTAGTG
TACCCATAGACAGTAAGATCAATTTTGCGGGGTTATAACTGTTTACATAAGCAGGGCAGG
ATAGGAAAGTAATTTAATCAATCGCTTAAAAAAAGCAATGCAAAAGAATTTACCAACTAT
TCGTTTGCTTGGATTAGCTGGTTATTTATTACTTTCTATACGGGCAGCGTATGCGAGAAA
CGATGTTGTCTATCAGTGGAAATGCCGGGGAGCCGCGCATGAGGTCACATACCCCCATTG
ACAATGCTCGGGAATTCCTACTTTGCCGTGGAATTCGGTGTCTTTCAAGACGCTTTTTAC
TCGTGTATGTTTAGTATTTGAATTATTTGGGATGGAGTTAAAGCGATCTGCAGCGTCCAT
TACAAAGGCTGTATTTCTAGGCGTAAAAAGCCACATAGATCGTCCGCGAATCCCCGCTAC
CGGTTAATGTAAAAAACGCCCAGATCTTGGCGTCAGAAGTCCGAACTTTATATCGCATTT
AGCTGCGAAACTACCAGCAATAGTGGATGACAGGAGACGACAGCTTTAGTGCGATTATAA
AAAGCAAATGATTTAAATATCAAATCGCGGCAGAGGGCATTCAAAATCATCGCCTTAATT
TATACAGCGCCTAGAGTCCGAAAGATCAGAATTTTGTTATTAAAGTTGTCATTACTTGGA
TGAGAGCCTAAATTACCACTTGTTGGTTTACAGGTCAGGTCGTTTGTTGAAAAAGAGCTG
TTCTACCATTTGTATTGTTAAAGATCAACGGAAATACGGAATATTTTAACACAGAGCAAT
GAGAGAAG
