- Region 'REG00000836'
Cis-regulatory Region
Name
Ci-tensin 3545/6022
Short name
n/a
Region ID
REG00000836
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-26)
Region of Ci-tensin from +3545bp to +6022bp. This region drives notochord expression.
The corresponding construct is named p(-2.5 k)tensin/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-tensin 2942/6022 by deletion
4,280,3614,282,837
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [4,280,361 / 4,282,837] on scaffold KhC9
Show sequence
Length: 2,477
CCATGGCCGTTTCGAATTTTTCGATCCATGAAGCCCGCTTAAACCTGTTACCACTGACAG
CACACTTGGCTGTATTGGGCTCGACAAACCATTGCCACTTGACACCACTCAACGAGCCTT
TTGCCACGAGGGCAATCAATACATGTTTATCCGCGCTTTGTAACTGTATTGTATGATGCA
AGGTTGCAGTGCAGGCTAATGGCTAATTAAACCAGCGAAGTAGAAGAGAAGTTTGAATAA
TTTTGCAATTTATCGCGGAAAAAAACTAAATCGGGAAGTTTTGCATATAAAGCTCAGTCG
GTGCGCGTAGCACCGTCGCTTTATGTTGTATAGATATAGAAACTCATTAGCTTAGACGTG
CAGCAGGGTTGTGAGGTTTCTGACAACTTTGATGCCAATCGTAGTTGTCTATTTCAGGCG
AAGTGACGTGTCGACGACAATAGATATCTTATTAGCTGTCTATGAACAACCTAGAAATTT
TATTTGTGGTAATATGCATAGTGTAAGATACCGGTTCCGTAAACGCGTGCCATATACCCT
AAAGTTAATTGCCAGTACTGTAATAAGGTTGCGCGCAAATGGGGTAAATGTGTATTGTAG
GCTGACCAGTAAATGGTATATGCATTGTGTACATAAGCATTCCACGGTTTAATTAGTAAC
GTTACTAATATTTTTACAAACATGGCTTTTATAGTAAGCGTTACCATAGTATTTGACGGC
AGATTTCGTTATAAGCGCTATACCATAGTATTTGACGGCAGAATTAGTTTAGCATCGAGT
CCTGCTATTTTCGCTCTTGATTTAATCAGGTAAGCAGGAGCCAGGGACACAGAACAACAG
ATGTCGGATACAGGATGTTTGTTAACCAAACCACAGGACGAACCGCACTCTAATCGCAAA
GGATTGTTTCGTCTATCTGCCCATTCAGGCTCGTACGAAAACGAACATTAAATGGTTGTA
TATTGATTGTATTACTTTGCGCATTTAGCTTATTTGGAATACGCTTACGCTGCATTGGAC
CTGTGTTATAGGGTCGTTCGAGGTCGTACCCTGTGCTCCAATGGTTAGGCATGGAGCATG
CGCACTAATCGTATTATGACGATATGGCGGTATTCCTTTCACGGTAATTGAATTGGAAAA
TGAATAACTCGGTATGACCAATGCTTGTAAAGTTGCGATTATAGCGCGCAACGGTCAGCG
ATAGTCGAGTAATGTTTGCCTAAGATTTTCACTTCGGTGTGTTTTCTAGTTTACTGGGAA
ATGCGAAGTTACGAGGACAGCATTCGAGTGACTTTGTTTACTCTGGAAATCTGTTGTTTG
CTTCGCAACTATTCAGCTTGCTCGACCGCTTGTTCAAGGCAGAGATTGGCTCGCTAATTA
ATGTTTACCCGCCTGGGCGATGCCTGCCTTTCTCGGGCCGACGGATGGCGTATGAGTGCG
AATCGGCGATTGAAGATCACCGGCCGTCATGTAGGAGTCCAGATCGCCCGCAGAAGTTCG
GTCGCAGGTTCGGCTGTAGGTCAGCGTCGCTGGCGGGTTTACGACCTAGTGTAAAAGCGG
TGCATACGGTCTCGTTGGCCGGACGACTGTAAAACCGCAGCAGTTTAATAAGTTACTACT
ATACTGGCGTCGTATTGCAAGGTTTCCGTCTCTGCGGTTTCAAGGCGAAGAATAATGCGG
GTTTTAGTGTACCCATAGACAGTAAGATCAATTTTGCGGGGTTATAACTGTTTACATAAG
CAGGGCAGGATAGGAAAGTAATTTAATCAATCGCTTAAAAAAAGCAATGCAAAAGAATTT
ACCAACTATTCGTTTGCTTGGATTAGCTGGTTATTTATTACTTTCTATACGGGCAGCGTA
TGCGAGAAACGATGTTGTCTATCAGTGGAAATGCCGGGGAGCCGCGCATGAGGTCACATA
CCCCCATTGACAATGCTCGGGAATTCCTACTTTGCCGTGGAATTCGGTGTCTTTCAAGAC
GCTTTTTACTCGTGTATGTTTAGTATTTGAATTATTTGGGATGGAGTTAAAGCGATCTGC
AGCGTCCATTACAAAGGCTGTATTTCTAGGCGTAAAAAGCCACATAGATCGTCCGCGAAT
CCCCGCTACCGGTTAATGTAAAAAACGCCCAGATCTTGGCGTCAGAAGTCCGAACTTTAT
ATCGCATTTAGCTGCGAAACTACCAGCAATAGTGGATGACAGGAGACGACAGCTTTAGTG
CGATTATAAAAAGCAAATGATTTAAATATCAAATCGCGGCAGAGGGCATTCAAAATCATC
GCCTTAATTTATACAGCGCCTAGAGTCCGAAAGATCAGAATTTTGTTATTAAAGTTGTCA
TTACTTGGATGAGAGCCTAAATTACCACTTGTTGGTTTACAGGTCAGGTCGTTTGTTGAA
AAAGAGCTGTTCTACCATTTGTATTGTTAAAGATCAACGGAAATACGGAATATTTTAACA
CAGAGCAATGAGAGAAG
