- Region 'REG00000834'
Cis-regulatory Region
Name
Ci-Zipper -781/79
Short name
n/a
Region ID
REG00000834
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci-Zipper from -781bp to +79bp. This region can t drive notochord expression.
The corresponding construct is named p(-0.8 k)zipper/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-Zipper -1169/79 by deletion
1,527,7401,528,599
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,527,740 / 1,528,599] on scaffold KhC11
Show sequence
Length: 860
CCATGGTCCAATCAACTTTACCATGTTCCTTACAATGTTTGGCGAAAAGTTAAACGGCAC
TGACCCTGAGGAAGTTATAAGGAACGCCTTTGCTTGCTTTGATGAAGAAGGCACCGGAAA
AATTAACGAGGATTATCTCCGAGAACTTCTCACTTGCATGGGTGATCGTTTCAATGATGA
TCAAGTGGATGAAATGTACAGAGAAGCTCCAATCAATGCTAAAACTGGTGACTTTGACTA
CATAGAGTTCACAAGGATTCTAAAGCATGGCGCTAAAGAAAAAGATGACATTTAGATACT
ATTAATAGTTGTATTCTACTGTCATCTGAATATATAATGAATCGATATTGGCCGATATAA
GTACGATGGTCTGTCTTAAAACCTAGCACTCCTGAAATCAGTTTTTTTTTAAATAAAAAC
TGGTTGTTCTATTATTAAGGACTATGAAATGGTTTTGGCATTTATATAAACTTTGTTATT
GGTGTGTTAACGTTTACTCAGATTTGCCCATTATGTTGTTAGTGTTAGCAAAACGTAGAG
TGTACTATTTCAACTGCATAATAATAACCATAATTAATCAATTTAATTGGAATATGTCTG
TAATCGAAACCTAATATAATTGTATTTTTTTGATTTGAAATTTGATGCTGTCATTATAAA
ATAATCATCTGCACTTTTTTTCCTGAACAGTTGTAAATAATTTTTATGCCACAAAGTCAC
ACTATGGGGTGATTTGGTATTGCCTTGATTTCAAATGTAACTCTAAAACTTTGCATTTCA
GGAGACTTATTATTATTTTTTGAGTGAGATTTTGAGTTAACTTTTTTCCGAGTGTTGACT
TCAGTACAGAATGGATGACA
