- Region 'REG00000833'
Cis-regulatory Region
Name
Ci-Zipper -1169/79
Short name
n/a
Region ID
REG00000833
Status
Curated
Origin
natural region from C. robusta formely Ciona int. type A
Type of Activity
regulatory_region
(extended_promoter)
Author
Hiroki Takahashi (2010-07-07)
Annotator
Clara Degos (2010-07-07)
Curator
Delphine Dauga (2010-07-15)
Region upstream of Ci-Zipper from -1169bp to +79bp. This region can t drive notochord expression.
The corresponding construct is named p(-1.3 k)zipper/lacZ in the paper.
Be careful, coordinates in the paper may be different from ANISEED coordinates. We took the KH transcript model as reference.
Modification of Ci-Zipper -1983/79 by deletion
1,527,7401,528,987
| Motif Name | Binding Factor(s) | Sequence | Position in Region | Comment |
|---|
Aniseed Coordinates: [1,527,740 / 1,528,987] on scaffold KhC11
Show sequence
Length: 1,248
AAGCTTTTAACATGATCGACCAAAACCGTGATGGATTTGTTGATCACGAAGATTTGAAGG
ACATGCTGGCTTCATTGGGTAAGTTGTGTATATGTAGAAGTTCTGTAATGATAAAACATT
GACCAAAATTACATACACTTGTGCTTCTAAAATGCACCAGATTAAAAAGTTTAATTTTTC
CTTGTATAGAATATTTAATACATAAACTATAGAACGCATTTCTGCCATAAAACACAATTT
TTGCATAGTTTTGTTAAGTTTTTCCAGTTCAGGTACATGTATTGTATTTGATTTTTTTTT
GCTAATATGTAATACATTTTTGAGTTTTTATTCCATTTTTAGGTAAAGAGGTTTCAGATG
ATTACATTGAGAAAATGTGTGGGGAAGCCCATGGTCCAATCAACTTTACCATGTTCCTTA
CAATGTTTGGCGAAAAGTTAAACGGCACTGACCCTGAGGAAGTTATAAGGAACGCCTTTG
CTTGCTTTGATGAAGAAGGCACCGGAAAAATTAACGAGGATTATCTCCGAGAACTTCTCA
CTTGCATGGGTGATCGTTTCAATGATGATCAAGTGGATGAAATGTACAGAGAAGCTCCAA
TCAATGCTAAAACTGGTGACTTTGACTACATAGAGTTCACAAGGATTCTAAAGCATGGCG
CTAAAGAAAAAGATGACATTTAGATACTATTAATAGTTGTATTCTACTGTCATCTGAATA
TATAATGAATCGATATTGGCCGATATAAGTACGATGGTCTGTCTTAAAACCTAGCACTCC
TGAAATCAGTTTTTTTTTAAATAAAAACTGGTTGTTCTATTATTAAGGACTATGAAATGG
TTTTGGCATTTATATAAACTTTGTTATTGGTGTGTTAACGTTTACTCAGATTTGCCCATT
ATGTTGTTAGTGTTAGCAAAACGTAGAGTGTACTATTTCAACTGCATAATAATAACCATA
ATTAATCAATTTAATTGGAATATGTCTGTAATCGAAACCTAATATAATTGTATTTTTTTG
ATTTGAAATTTGATGCTGTCATTATAAAATAATCATCTGCACTTTTTTTCCTGAACAGTT
GTAAATAATTTTTATGCCACAAAGTCACACTATGGGGTGATTTGGTATTGCCTTGATTTC
AAATGTAACTCTAAAACTTTGCATTTCAGGAGACTTATTATTATTTTTTGAGTGAGATTT
TGAGTTAACTTTTTTCCGAGTGTTGACTTCAGTACAGAATGGATGACA
